GSA.internal: Internal GSA functions
In GSA: Gene Set Analysis

GSA-internal

R Documentation

Internal GSA functions

Description

Internal samr functions

Usage

## S3 method for class 'GSA.func'
print(x, ...) 
## S3 method for class 'GSA'
print(x, ...) 
## S3 method for class 'GSA.genesets'
summary(object, ...)
varr(x, meanx=NULL) 
coxvar(x, y, ic, offset = rep(0., length(y)), coxstuff.obj = NULL)
coxstuff(x, y, ic, offset = rep(0., length(y))) 
est.s0(tt,sd,s0.perc=seq(0,1, by=.05))
GSA.xl.genescores(GSA.listsets.obj, genesets,  GSA.obj,  genenames)
GSA.xl.plot(GSA.obj,  fac=.10, FDRcut=1)
GSA.xl.summary.genesets(GSA.genesets.obj)
GSA.xl.correlate(GSA.genesets.obj, genenames)
ttest.func(x, y, s0 = 0, sd=NULL)
cox.func(x, y, censoring.status, s0 = 0)
multiclass.func(x, y, s0 = 0)
quantitative.func(x, y, s0 = 0)