GSAgm-package: GSAgm package
In GSAgm: Gene Set Analysis using the Gamma Method

Description Details Author(s) References

This package runs gene set analyses on SNP and RNA data. See individual functions for details.

Package:	GSAgm
Type:	Package
Version:	1.0
Date:	2013-12-04
License:	GPL-2

Rama Raghavan, Alice Wang Maintainer: Rama Raghavan <rraghavan@kumc.edu>

1. Biernacka JM, Jenkins GD, Wang L, et al. Use of the gamma method for self-contained gene-set analysis of SNP data. Eur J Hum Genet 2012;20(5):565-71.

2. Fridley BL, Jenkins GD, Grill DE, et al. Soft truncation thresholding for gene set analysis of RNA-seq data: application to a vaccine study. Sci Rep 2013;3:2898.

3. Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010;26(1):139-40.

4. Zaykin DV, Zhivotovsky LA, Czika W, et al. Combining p-values in large-scale genomics experiments. Pharm Stat 2007;6(3):217-26.

5. Fridley, B.L., and Biernacka, J.M. (2011). Gene set analysis of SNP data: benefits, challenges, and future directions. Eur J Hum Genet 19, 837-843.

GSAgm documentation built on May 2, 2019, 7:17 a.m.