Man pages for GSSTDA
Progression Analysis of Disease with Survival using Topological Data Analysis
| case_tag | Case-control vector |
| check_arg_mapper | check_arg_mapper |
| check_filter_values | check_filter_values |
| check_full_data | check_full_data |
| check_gene_selection | check_gene_selection |
| check_vectors | check_vectors |
| clust_all_levels | Get clusters for all data level |
| clust_lev | Get clusters for a particular data level |
| compute_node_adjacency | Computes the adjacency matrix. |
| cox_all_genes | Survival analysis based on gene expression levels. |
| denoise_rectangular_matrix | Rectangular Matrix Denoiser. |
| dsga | Disease-Specific Genomic Analysis |
| flatten_normal_tiss | Flatten normal tissues |
| full_data | Gene expression matrix |
| generate_disease_component | Generate disease component matrix. |
| gene_selection | Gene selection and filter function |
| gene_selection_ | Private gene_selection_ |
| gene_selection.default | gene_selection_classes.default |
| gene_selection.dsga_object | gene_selection_classes.dsga_object |
| gene_selection_surv | Gene selection based on variability and the relationship to... |
| get_intervals_One_D | Extract intervals from filter function output values. |
| gsstda | Gene Structure Survival using Topological Data Analysis... |
| incMarPas | Incomplete Marcenko-Pastur Integral |
| levels_to_nodes | Extract Information about Nodes |
| lp_norm_k_powers_surv | Filtering function |
| mapper | Mapper object |
| map_to_color | Map to color |
| MedianMarcenkoPastur | Median of the Marcenko-Pastur Distribution |
| one_D_Mapper | one_D_Mapper |
| optimal_SVHT_coef_gamma_known | Optimal SVHT Coefficient with Known Noise Level |
| optimal_SVHT_coef_gamma_unknown | Optimal SVHT Coefficient with Unknown Noise Level |
| plot_dsga | plot dsga |
| plot_mapper | Plot mapper |
| results_dsga | results dsga |
| samples_in_levels | Samples in levels |
| survival_event | Survival event vector |
| survival_time | Survival time vector |
