plot_dsga: plot dsga
In GSSTDA: Progression Analysis of Disease with Survival using Topological Data Analysis
plot_dsga R Documentation
plot dsga
Description
It draws the heatmap of the dsga result by selecting the 100 genes with
the highest variability between samples.
Usage
plot_dsga(selected_matrix_disease_component, case_tag)
Arguments
selected_matrix_disease_component
Disease component matrix of
the selected genes that contains the disease component of all patients.
Output of the function generate_disease_component.
case_tag
Character vector of the same length as the number of
columns of full_data. Patients must be in the same order as in full_data.
It must be indicated for each patient whether he/she is healthy or not.
One value should be used to indicate whether the patient is healthy and
another value should be used to indicate whether the patient's sample is
tumourous. The user will then be asked which one indicates whether
the patient is healthy. Only two values are valid in the vector in total.
Value
The heatmap of the dsga result.
GSSTDA documentation built on June 22, 2024, 10:44 a.m.
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| plot_dsga | R Documentation |
plot dsga
Description
It draws the heatmap of the dsga result by selecting the 100 genes with the highest variability between samples.
Usage
plot_dsga(selected_matrix_disease_component, case_tag)
Arguments
selected_matrix_disease_component |
Disease component matrix of
the selected genes that contains the disease component of all patients.
Output of the function |
case_tag |
Character vector of the same length as the number of columns of full_data. Patients must be in the same order as in full_data. It must be indicated for each patient whether he/she is healthy or not. One value should be used to indicate whether the patient is healthy and another value should be used to indicate whether the patient's sample is tumourous. The user will then be asked which one indicates whether the patient is healthy. Only two values are valid in the vector in total. |
Value
The heatmap of the dsga result.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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