GWAF: Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data

Functions for genome-wide association/interaction analysis and rare variant analysis on a continuous/dichotomous trait using family data, and for making genome-wide p-value plot and QQ plot.

AuthorMing-Huei Chen <mhchen@bu.edu> and Qiong Yang <qyang@bu.edu>
Date of publication2015-03-12 20:46:12
MaintainerMing-Huei Chen <mhchen@bu.edu>
LicenseGPL (>= 2)
Version2.2

View on CRAN

Man pages

auto: function to generate scripts for genome-wide...

geepack.lgst: function for testing association between a dichotomous trait...

geepack.lgst.batch: function to test genetic associations between a dichotomous...

geepack.lgst.batch.imputed: function to test genetic associations between a dichotomous...

geepack.lgst.imputed: function for testing association between a dichotomous trait...

geepack.lgst.int: function for testing gene-environment or gene-gene...

geepack.lgst.int.batch: function to test gene-environment or gene-gene interactions...

geepack.lgst.int.batch.imputed: function to test gene-environment or gene-gene interactions...

geepack.lgst.int.imputed: function for testing gene-environment or gene-gene...

geepack.quant.batch: function to test genetic associations between a continuous...

geepack.quant.batch.imputed: function to test associations between a continuous trait and...

geepack.quant.int.batch: function to test gene-environment or gene-gene interactions...

geepack.quant.int.batch.imputed: function to test gene-environment or gene-gene interactions...

glmm.lgst: function for testing association between a dichotomous trait...

glmm.lgst.batch: function to test genetic association between a dichotomous...

GWAF-package: Genome-wide association/interaction analysis and rare variant...

GWplot: function for making genome-wide p-value plot

lme.batch: function to test genetic associations between a continuous...

lme.batch.imputed: function to test associations between a continuous trait and...

lme.int.batch: function to test gene-environment or gene-gene interactions...

lme.int.batch.imputed: function to test gene-environment or gene-gen interaction and...

lmeV.batch.imputed: function to efficiently test associations between a...

qq: function to make Qantile-Qantile (QQ) plot for p-values

Functions

auto Man page
geepack.lgst Man page
geepack.lgst.batch Man page
geepack.lgst.batch.imputed Man page
geepack.lgst.imputed Man page
geepack.lgst.int Man page
geepack.lgst.int.batch Man page
geepack.lgst.int.batch.imputed Man page
geepack.lgst.int.imputed Man page
geepack.quant.batch Man page
geepack.quant.batch.imputed Man page
geepack.quant.int.batch Man page
geepack.quant.int.batch.imputed Man page
glmm.lgst Man page
glmm.lgst.batch Man page
GWAF Man page
GWAF-package Man page
GWplot Man page
lmepack.batch Man page
lmepack.batch.imputed Man page
lmepack.int.batch Man page
lmepack.int.batch.imputed Man page
lmeVpack.batch.imputed Man page
qq Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.