GWAF: Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data

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Functions for genome-wide association/interaction analysis and rare variant analysis on a continuous/dichotomous trait using family data, and for making genome-wide p-value plot and QQ plot.

Author
Ming-Huei Chen <mhchen@bu.edu> and Qiong Yang <qyang@bu.edu>
Date of publication
2015-03-12 20:46:12
Maintainer
Ming-Huei Chen <mhchen@bu.edu>
License
GPL (>= 2)
Version
2.2

View on CRAN

Man pages

auto
function to generate scripts for genome-wide...
geepack.lgst
function for testing association between a dichotomous trait...
geepack.lgst.batch
function to test genetic associations between a dichotomous...
geepack.lgst.batch.imputed
function to test genetic associations between a dichotomous...
geepack.lgst.imputed
function for testing association between a dichotomous trait...
geepack.lgst.int
function for testing gene-environment or gene-gene...
geepack.lgst.int.batch
function to test gene-environment or gene-gene interactions...
geepack.lgst.int.batch.imputed
function to test gene-environment or gene-gene interactions...
geepack.lgst.int.imputed
function for testing gene-environment or gene-gene...
geepack.quant.batch
function to test genetic associations between a continuous...
geepack.quant.batch.imputed
function to test associations between a continuous trait and...
geepack.quant.int.batch
function to test gene-environment or gene-gene interactions...
geepack.quant.int.batch.imputed
function to test gene-environment or gene-gene interactions...
glmm.lgst
function for testing association between a dichotomous trait...
glmm.lgst.batch
function to test genetic association between a dichotomous...
GWAF-package
Genome-wide association/interaction analysis and rare variant...
GWplot
function for making genome-wide p-value plot
lme.batch
function to test genetic associations between a continuous...
lme.batch.imputed
function to test associations between a continuous trait and...
lme.int.batch
function to test gene-environment or gene-gene interactions...
lme.int.batch.imputed
function to test gene-environment or gene-gen interaction and...
lmeV.batch.imputed
function to efficiently test associations between a...
qq
function to make Qantile-Qantile (QQ) plot for p-values

Files in this package

GWAF
GWAF/COPYING
GWAF/inst
GWAF/inst/doc
GWAF/inst/doc/UsingGWAF.pdf
GWAF/NAMESPACE
GWAF/R
GWAF/R/auto.R
GWAF/R/geepack.lgst.R
GWAF/R/geepack.lgst.batch.imputed.R
GWAF/R/glmm.lgst.R
GWAF/R/geepack.lgst.int.batch.R
GWAF/R/geepack.lgst.int.imputed.R
GWAF/R/GWplot.R
GWAF/R/geepack.quant.int.imputed.R
GWAF/R/geepack.lgst.batch.R
GWAF/R/lme.int.R
GWAF/R/geepack.quant.R
GWAF/R/geepack.quant.imputed.R
GWAF/R/qq.R
GWAF/R/glmm.lgst.batch.R
GWAF/R/lme.imputed.R
GWAF/R/geepack.quant.int.R
GWAF/R/lme.int.imputed.R
GWAF/R/lmeV.imputed.R
GWAF/R/geepack.lgst.int.batch.imputed.R
GWAF/R/geepack.lgst.imputed.R
GWAF/R/geepack.lgst.int.R
GWAF/R/lme.R
GWAF/MD5
GWAF/DESCRIPTION
GWAF/ChangeLog
GWAF/man
GWAF/man/GWAF-package.Rd
GWAF/man/geepack.lgst.int.batch.Rd
GWAF/man/GWplot.Rd
GWAF/man/geepack.lgst.int.imputed.Rd
GWAF/man/geepack.lgst.imputed.Rd
GWAF/man/lmeV.batch.imputed.Rd
GWAF/man/glmm.lgst.batch.Rd
GWAF/man/lme.batch.imputed.Rd
GWAF/man/geepack.quant.batch.Rd
GWAF/man/auto.Rd
GWAF/man/lme.batch.Rd
GWAF/man/geepack.lgst.batch.imputed.Rd
GWAF/man/geepack.quant.batch.imputed.Rd
GWAF/man/geepack.lgst.batch.Rd
GWAF/man/lme.int.batch.imputed.Rd
GWAF/man/geepack.lgst.Rd
GWAF/man/lme.int.batch.Rd
GWAF/man/geepack.lgst.int.batch.imputed.Rd
GWAF/man/geepack.lgst.int.Rd
GWAF/man/qq.Rd
GWAF/man/geepack.quant.int.batch.Rd
GWAF/man/geepack.quant.int.batch.imputed.Rd
GWAF/man/glmm.lgst.Rd