GWAF: Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data
Version 2.2

Functions for genome-wide association/interaction analysis and rare variant analysis on a continuous/dichotomous trait using family data, and for making genome-wide p-value plot and QQ plot.

AuthorMing-Huei Chen <mhchen@bu.edu> and Qiong Yang <qyang@bu.edu>
Date of publication2015-03-12 20:46:12
MaintainerMing-Huei Chen <mhchen@bu.edu>
LicenseGPL (>= 2)
Version2.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("GWAF")

Getting started

Package overview

Popular man pages

geepack.lgst: function for testing association between a dichotomous trait...
geepack.lgst.int.batch: function to test gene-environment or gene-gene interactions...
geepack.lgst.int.batch.imputed: function to test gene-environment or gene-gene interactions...
glmm.lgst: function for testing association between a dichotomous trait...
lme.int.batch: function to test gene-environment or gene-gene interactions...
lme.int.batch.imputed: function to test gene-environment or gene-gen interaction and...
qq: function to make Qantile-Qantile (QQ) plot for p-values
See all...

All man pages Function index File listing

Man pages

auto: function to generate scripts for genome-wide...
geepack.lgst: function for testing association between a dichotomous trait...
geepack.lgst.batch: function to test genetic associations between a dichotomous...
geepack.lgst.batch.imputed: function to test genetic associations between a dichotomous...
geepack.lgst.imputed: function for testing association between a dichotomous trait...
geepack.lgst.int: function for testing gene-environment or gene-gene...
geepack.lgst.int.batch: function to test gene-environment or gene-gene interactions...
geepack.lgst.int.batch.imputed: function to test gene-environment or gene-gene interactions...
geepack.lgst.int.imputed: function for testing gene-environment or gene-gene...
geepack.quant.batch: function to test genetic associations between a continuous...
geepack.quant.batch.imputed: function to test associations between a continuous trait and...
geepack.quant.int.batch: function to test gene-environment or gene-gene interactions...
geepack.quant.int.batch.imputed: function to test gene-environment or gene-gene interactions...
glmm.lgst: function for testing association between a dichotomous trait...
glmm.lgst.batch: function to test genetic association between a dichotomous...
GWAF-package: Genome-wide association/interaction analysis and rare variant...
GWplot: function for making genome-wide p-value plot
lme.batch: function to test genetic associations between a continuous...
lme.batch.imputed: function to test associations between a continuous trait and...
lme.int.batch: function to test gene-environment or gene-gene interactions...
lme.int.batch.imputed: function to test gene-environment or gene-gen interaction and...
lmeV.batch.imputed: function to efficiently test associations between a...
qq: function to make Qantile-Qantile (QQ) plot for p-values

Functions

Files

COPYING
inst
inst/doc
inst/doc/UsingGWAF.pdf
NAMESPACE
R
R/auto.R
R/geepack.lgst.R
R/geepack.lgst.batch.imputed.R
R/glmm.lgst.R
R/geepack.lgst.int.batch.R
R/geepack.lgst.int.imputed.R
R/GWplot.R
R/geepack.quant.int.imputed.R
R/geepack.lgst.batch.R
R/lme.int.R
R/geepack.quant.R
R/geepack.quant.imputed.R
R/qq.R
R/glmm.lgst.batch.R
R/lme.imputed.R
R/geepack.quant.int.R
R/lme.int.imputed.R
R/lmeV.imputed.R
R/geepack.lgst.int.batch.imputed.R
R/geepack.lgst.imputed.R
R/geepack.lgst.int.R
R/lme.R
MD5
DESCRIPTION
ChangeLog
man
man/GWAF-package.Rd
man/geepack.lgst.int.batch.Rd
man/GWplot.Rd
man/geepack.lgst.int.imputed.Rd
man/geepack.lgst.imputed.Rd
man/lmeV.batch.imputed.Rd
man/glmm.lgst.batch.Rd
man/lme.batch.imputed.Rd
man/geepack.quant.batch.Rd
man/auto.Rd
man/lme.batch.Rd
man/geepack.lgst.batch.imputed.Rd
man/geepack.quant.batch.imputed.Rd
man/geepack.lgst.batch.Rd
man/lme.int.batch.imputed.Rd
man/geepack.lgst.Rd
man/lme.int.batch.Rd
man/geepack.lgst.int.batch.imputed.Rd
man/geepack.lgst.int.Rd
man/qq.Rd
man/geepack.quant.int.batch.Rd
man/geepack.quant.int.batch.imputed.Rd
man/glmm.lgst.Rd
GWAF documentation built on May 20, 2017, 3:46 a.m.

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