GWAF: Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data

Functions for genome-wide association/interaction analysis and rare variant analysis on a continuous/dichotomous trait using family data, and for making genome-wide p-value plot and QQ plot.

AuthorMing-Huei Chen <mhchen@bu.edu> and Qiong Yang <qyang@bu.edu>
Date of publication2015-03-12 20:46:12
MaintainerMing-Huei Chen <mhchen@bu.edu>
LicenseGPL (>= 2)
Version2.2

View on CRAN

Man pages

auto: function to generate scripts for genome-wide...

geepack.lgst: function for testing association between a dichotomous trait...

geepack.lgst.batch: function to test genetic associations between a dichotomous...

geepack.lgst.batch.imputed: function to test genetic associations between a dichotomous...

geepack.lgst.imputed: function for testing association between a dichotomous trait...

geepack.lgst.int: function for testing gene-environment or gene-gene...

geepack.lgst.int.batch: function to test gene-environment or gene-gene interactions...

geepack.lgst.int.batch.imputed: function to test gene-environment or gene-gene interactions...

geepack.lgst.int.imputed: function for testing gene-environment or gene-gene...

geepack.quant.batch: function to test genetic associations between a continuous...

geepack.quant.batch.imputed: function to test associations between a continuous trait and...

geepack.quant.int.batch: function to test gene-environment or gene-gene interactions...

geepack.quant.int.batch.imputed: function to test gene-environment or gene-gene interactions...

glmm.lgst: function for testing association between a dichotomous trait...

glmm.lgst.batch: function to test genetic association between a dichotomous...

GWAF-package: Genome-wide association/interaction analysis and rare variant...

GWplot: function for making genome-wide p-value plot

lme.batch: function to test genetic associations between a continuous...

lme.batch.imputed: function to test associations between a continuous trait and...

lme.int.batch: function to test gene-environment or gene-gene interactions...

lme.int.batch.imputed: function to test gene-environment or gene-gen interaction and...

lmeV.batch.imputed: function to efficiently test associations between a...

qq: function to make Qantile-Qantile (QQ) plot for p-values

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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