GWsignif: Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests
Version 1.2

The correlations and linkage disequilibrium between tests can vary as a function of minor allele frequency thresholds used to filter variants, and also varies with different choices of test statistic for region-based tests. Appropriate genome-wide significance thresholds can be estimated empirically through permutation on only a small proportion of the whole genome.

AuthorChangJiang Xu and Celia M.T. Greenwood
Date of publication2016-09-12 20:55:00
MaintainerChangJiang Xu <changjiang.h.xu@gmail.com>
LicenseGPL (>= 2)
Version1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("GWsignif")

Getting started

Package overview

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Man pages

GWsignif: Estimating Genome-Wide Significance for Whole Genome...
GWsignif-package: Estimating Genome-Wide Significance for Whole Genome...

Functions

GWsignif Man page Source code
GWsignif-package Man page

Files

NAMESPACE
R
R/GWsignif.R
MD5
DESCRIPTION
man
man/GWsignif-package.Rd
man/GWsignif.Rd
GWsignif documentation built on May 20, 2017, 12:51 a.m.

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