GWsignif: Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests
Version 1.2

The correlations and linkage disequilibrium between tests can vary as a function of minor allele frequency thresholds used to filter variants, and also varies with different choices of test statistic for region-based tests. Appropriate genome-wide significance thresholds can be estimated empirically through permutation on only a small proportion of the whole genome.

Package details

AuthorChangJiang Xu and Celia M.T. Greenwood
Date of publication2016-09-12 20:55:00
MaintainerChangJiang Xu <[email protected]>
LicenseGPL (>= 2)
Version1.2
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("GWsignif")

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GWsignif documentation built on May 30, 2017, 2:59 a.m.