arrange_probabel_phe: arranges ProbABEL phenotype-file

In GenABEL: genome-wide SNP association analysis

Description

Function to arrange ProbABEL phenotype-file; it takes phenotypic data as input and aligns that with genotypic data of ProbABEL

Usage

  arrange_probabel_phe(modelterms, phedata, gendata,
    file = "probabel.PHE")

Arguments

modelterms	vector of character, which specifies the variables to be included into ProbABEL phenotype-file. Should contain, and start with 'id' column, which should provide the same ID codes as these in gendata
phedata	phenotypic data (matrix, data.frame, or gwaa.data-class object)
gendata	genetic data to be used with ProbABEL, either databel-class object or name of the (index/data) file containing filevector data for ProbABEL
file	name of the ProbABEL phenotype file

Value

file with phenotypes ready for use with ProbABEL

Author(s)

Yurii Aulchenko

GenABEL documentation built on May 30, 2017, 3:36 a.m.