Description Usage Arguments Author(s)
Export GenABEL data in PLINK format. This function is a
simple wrapper to the export.merlin
function with specific arguments + few lines of code to
export phenotypes
1 2 3 | export.plink(data, filebasename = "plink",
phenotypes = "all", transpose = TRUE,
export012na = FALSE, ...)
|
data |
GenABEL data object of 'gwaa.data'-class to be exported. |
filebasename |
base file name for exported data, extensions '.ped', '.map' and '.phe' (for phenotype file) are added for specific output files. |
phenotypes |
NULL (no phenotypes exported), "all" (default) for all phenotypes or a vector of character with names of phenotypes to be exported. |
transpose |
if TRUE (default), 'tped' files will be produced, else 'ped' files are produced. |
export012na |
if TRUE, export in numeric (0, 1, 2, NA) format, as opposed to ATGC format (default: FALSE). |
... |
arguments passed to
|
Yurii Aulchenko
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