GenCAT: Genetic Class Association Testing
Version 1.0.3

Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian J, Nunez S, Reed E, Reilly MP, Foulkes AS (2016) A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS ONE 11(2): e0148218".

Browse man pages Browse package API and functions Browse package files

AuthorEric Reed, Sara Nunez, Jing Qian, Andrea Foulkes
Date of publication2016-06-10 23:12:38
MaintainerEric Reed <reeder@bu.edu>
LicenseGPL-2
Version1.0.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("GenCAT")

Man pages

CardioData: GWAS data from CARDIoGRAM on CAD
CardioMapped: CARDIoGRAM data mapped to classes
coords: Protein coding gene coordinates (GRCh37/hg19)
GenCAT: Running GenCAT
GenCAT_manhattan: Create Manhattan Plot of GenCAT Results
GenCAT-package: Genetic Class Association Testing
geno: Genotype Data
map2class: Mapping SNPs to Classes

Functions

CardioData Man page
CardioMapped Man page
GenCAT Man page Source code
GenCAT-package Man page Man page
GenCAT_manhattan Man page Source code
coords Man page
geno Man page
map2class Man page Source code

Files

inst
inst/doc
inst/doc/GenCAT-vignette.html
inst/doc/GenCAT-vignette.Rmd
inst/doc/GenCAT-vignette.R
NAMESPACE
data
data/geno.RData
data/CardioData.RData
data/CardioMapped.rda
data/coords.RData
data/datalist
R
R/GenCAT_functions.R
vignettes
vignettes/GenCAT-vignette.Rmd
MD5
build
build/vignette.rds
build/partial.rdb
DESCRIPTION
man
man/GenCAT.Rd
man/map2class.Rd
man/coords.Rd
man/CardioData.Rd
man/GenCAT_manhattan.Rd
man/geno.Rd
man/GenCAT-package.Rd
man/CardioMapped.Rd
GenCAT documentation built on May 19, 2017, 11:39 p.m.