coords: Protein coding gene coordinates (GRCh37/hg19)

In GenCAT: Genetic Class Association Testing

Description

Protein coding gene coordinates adapted from UCSC Genomes Browser KnownCanonical track.

Usage

data("coords")

Format

A data frame with 18054 observations on the following 4 variables.

chr

a numeric vector

start

a numeric vector

stop

a numeric vector

class

a character vector

Details

These protein coding gene coordinates were adapted from the KnownCanonical track from the UCSC Genome Browser, GRCH37

Source

https://genome.ucsc.edu/cgi-bin/hgTables

References

Rosenbloom, K. R., Armstrong, J., Barber, G. P., Casper, J., Clawson, H., Diekhans, M., Dreszer, T. R., Fujita, P. A., Guruvadoo, L., Haeussler, M., Harte, R. A., Heitner, S., Hickey, G., Hinrichs, A. S., Hubley, R., Karolchik, D., Learned, K., Lee, B. T., Li, C. H., Miga, K.H. , Nguyen, N., Paten, B., Raney, B.J., Smit, A. F., Speir, M. L., Zweig, A. S., Haussler, D., Kuhn, R. M., Kent, W.J. (2015) <DOI:10.1093/nar/gku1177> The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. Jan;43(Database issue):D670-81.

Examples

data("coords")

Example output

Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: ggplot2

GenCAT documentation built on May 30, 2017, 1:31 a.m.