GenWin: Spline Based Window Boundaries for Genomic Analyses
Version 0.1

Defines window or bin boundaries for the analysis of genomic data. Boundaries are based on the inflection points of a cubic smoothing spline fitted to the raw data. Along with defining boundaries, a technique to evaluate results obtained from unequally-sized windows is provided. Applications are particularly pertinent for, though not limited to, genome scans for selection based on variability between populations (e.g. using Wright's fixations index, Fst, which measures variability in subpopulations relative to the total population).

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AuthorTimothy M. Beissinger <beissinger@ucdavis.edu>
Date of publication2014-09-26 16:51:09
MaintainerTimothy M. Beissinger <beissinger@ucdavis.edu>
LicenseMIT + file LICENSE
Version0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("GenWin")

Man pages

chr6: Maize Fst Data
splineAnalyze: Spline-based window analysis

Functions

chr6 Man page
splineAnalyze Man page Source code

Files

NAMESPACE
data
data/chr6.RData
R
R/chr6-data.R
R/spline_analyze.R
MD5
DESCRIPTION
man
man/chr6.Rd
man/splineAnalyze.Rd
LICENSE
GenWin documentation built on May 29, 2017, 12:30 p.m.