GeneCycle: Identification of Periodically Expressed Genes

The GeneCycle package implements the approaches of Wichert et al. (2004), Ahdesmaki et al. (2005) and Ahdesmaki et al. (2007) for detecting periodically expressed genes from gene expression time series data.

Author
Miika Ahdesmaki, Konstantinos Fokianos, and Korbinian Strimmer.
Date of publication
2012-04-16 19:59:35
Maintainer
Miika Ahdesmaki <miika.ahdesmaki@gmail.com>
License
GPL (>= 3)
Version
1.1.2
URLs

View on CRAN

Man pages

avpg
Average Periodogram for Multiple (Genetic) Time Series
caulobacter
Microarray Time Series Data for 1444 Caulobacter Crescentus...
dominant.freqs
Dominant Frequencies in Multiple (Genetic) Time Series
fisher.g.test
Fisher's Exact g Test for Multiple (Genetic) Time Series
GeneCycle-internal
Internal GeneCycle Functions
is.constant
Simple Check for Constant Time Series
periodogram
Periodogram Power Spectral Density
robust.g.test
Robust g Test for Multiple (Genetic) Time Series

Files in this package

GeneCycle
GeneCycle/MD5
GeneCycle/inst
GeneCycle/inst/doc
GeneCycle/inst/doc/index.html
GeneCycle/inst/doc/wichert-table2.R
GeneCycle/inst/doc/caulobacter.R
GeneCycle/LICENSE
GeneCycle/data
GeneCycle/data/caulobacter.rda
GeneCycle/NAMESPACE
GeneCycle/man
GeneCycle/man/is.constant.Rd
GeneCycle/man/dominant.freqs.Rd
GeneCycle/man/fisher.g.test.Rd
GeneCycle/man/GeneCycle-internal.Rd
GeneCycle/man/avpg.Rd
GeneCycle/man/robust.g.test.Rd
GeneCycle/man/periodogram.Rd
GeneCycle/man/caulobacter.Rd
GeneCycle/DESCRIPTION
GeneCycle/R
GeneCycle/R/robust.spectrum.R
GeneCycle/R/is.constant.R
GeneCycle/R/robust.g.test.R
GeneCycle/R/fisher.g.test.R
GeneCycle/R/avgp.R
GeneCycle/CHANGES