Description Usage Format Source References Examples
This data set describes the temporal expression of 1444 genes (open reading frames) in the cell cycle of the bacterium Caulobacter crescentus.
1 |
caulobacter
is a longitudinal
object
containing the data from the Laub et al. (2000) experiment.
Essentially, this is a matrix with with 1444 columns (=genes)
and 11 rows (=time points)
This data is described in Laub et al. (2000).
Laub, M.T., McAdams, H.H., Feldblyum, Fraser, C.M., and Shapiro, L. (2000) Global analysis of the genetic network controlling a bacterial cell cycle. Science, 290, 2144–1248.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | # load GeneCycle library
library("GeneCycle")
# load data set
data(caulobacter)
is.longitudinal(caulobacter)
# how many samples and how many genes?
dim(caulobacter)
summary(caulobacter)
get.time.repeats(caulobacter)
# plot first nine time series
plot(caulobacter, 1:9)
|
Loading required package: MASS
Loading required package: longitudinal
Loading required package: corpcor
Loading required package: fdrtool
[1] TRUE
[1] 11 1444
Longitudinal data:
1444 variables measured at 11 different time points
Total number of measurements per variable: 11
Repeated measurements: none
To obtain the measurement design call 'get.time.repeats()'.
$time
[1] 0 15 30 45 60 75 90 105 120 135 150
$repeats
[1] 1 1 1 1 1 1 1 1 1 1 1
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