GenomicTools: Collection of Tools for Genomic Data Analysis

A loose collection of tools for the analysis of expression and genotype data, currently with the main focus on (e)QTL and MDR analysis.

AuthorDaniel Fischer
Date of publication2016-12-31 17:21:51
MaintainerDaniel Fischer <daniel.fischer@luke.fi>
LicenseGPL (>= 2)
Version0.2.3

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Files in this package

GenomicTools
GenomicTools/inst
GenomicTools/inst/ChangeLog
GenomicTools/inst/doc
GenomicTools/inst/doc/GenomicTools-Vignette.Rmd
GenomicTools/inst/doc/GenomicTools-Vignette.R
GenomicTools/inst/doc/GenomicTools-Vignette.pdf
GenomicTools/src
GenomicTools/src/Makevars
GenomicTools/src/mdr.h
GenomicTools/src/timeCluster.h
GenomicTools/src/mdr.cpp
GenomicTools/src/timeCluster.cpp
GenomicTools/src/Makevars.win
GenomicTools/NAMESPACE
GenomicTools/data
GenomicTools/data/annotTrack.rda
GenomicTools/data/phenoData.rda
GenomicTools/data/geneEXP.rda
GenomicTools/data/datalist
GenomicTools/data/mdrExample.rda
GenomicTools/data/genotData.rda
GenomicTools/R
GenomicTools/R/predict.mdr.R GenomicTools/R/mdrEnsemble.R GenomicTools/R/print.mdrEnsemble.R GenomicTools/R/visTrans.R GenomicTools/R/aaa.R GenomicTools/R/print.vcf.R GenomicTools/R/plot.qtlRes.R GenomicTools/R/importGTF.R GenomicTools/R/getRegionsOI.R GenomicTools/R/importGFF3.R GenomicTools/R/joinEQTLsig.R GenomicTools/R/print.eqtl.R GenomicTools/R/print.qtlRes.R GenomicTools/R/rearrange.R GenomicTools/R/plot.eqtl.R GenomicTools/R/summary.mdr.R GenomicTools/R/QTL.R GenomicTools/R/gtfToBed.R GenomicTools/R/makeannotList.R GenomicTools/R/eqtlLM.R GenomicTools/R/mdr.R GenomicTools/R/summary.qtlRes.R GenomicTools/R/recodeData.R GenomicTools/R/importVCF.R GenomicTools/R/plotGeneLocation.R GenomicTools/R/importSTARLog.R GenomicTools/R/getSNPlocations.R GenomicTools/R/print.mdrPredict.R GenomicTools/R/summary.PedMap.R GenomicTools/R/cWrappers.R GenomicTools/R/plot.eqtl.trans.R GenomicTools/R/columnLabels.R GenomicTools/R/print.PedMap.R GenomicTools/R/genotypePlot.R GenomicTools/R/eqtlDir.R GenomicTools/R/eqtl.R GenomicTools/R/summary.eqtl.R GenomicTools/R/importPED.R GenomicTools/R/joinEQTL.R GenomicTools/R/plot.mdr.R GenomicTools/R/print.mdr.R
GenomicTools/vignettes
GenomicTools/vignettes/transEQTL.png
GenomicTools/vignettes/cisEQTL.png
GenomicTools/vignettes/GenomicTools-Vignette.Rmd
GenomicTools/vignettes/MDR.png
GenomicTools/vignettes/GenomicTools-Vignette.bib
GenomicTools/vignettes/QTL2.png
GenomicTools/vignettes/QTL1.png
GenomicTools/MD5
GenomicTools/build
GenomicTools/build/vignette.rds
GenomicTools/DESCRIPTION
GenomicTools/man
GenomicTools/man/mdrEnsemble.Rd GenomicTools/man/mdr.Rd GenomicTools/man/QTL.Rd GenomicTools/man/mdrExample.Rd GenomicTools/man/importSTARLog.Rd GenomicTools/man/plot.qtlRes.Rd GenomicTools/man/importGFF3.Rd GenomicTools/man/eQTL.Rd GenomicTools/man/importGTF.Rd GenomicTools/man/geneEXP.Rd GenomicTools/man/importVCF.Rd GenomicTools/man/print.eqtl.Rd GenomicTools/man/annotTrack.Rd GenomicTools/man/plot.mdr.Rd GenomicTools/man/phenoData.Rd GenomicTools/man/recodeData.Rd GenomicTools/man/summary.eqtl.Rd GenomicTools/man/plot.eqtl.Rd GenomicTools/man/GenomicTools-package.Rd GenomicTools/man/genotData.Rd GenomicTools/man/importPED.Rd GenomicTools/man/print.mdr.Rd GenomicTools/man/gtfToBed.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.