GiANT: Gene Set Uncertainty in Enrichment Analysis

Toolbox for various enrichment analysis methods and quantification of uncertainty of gene sets.

Install the latest version of this package by entering the following in R:
install.packages("GiANT")
AuthorFlorian Schmid, Christoph Müssel, Johann M. Kraus, Hans A. Kestler
Date of publication2015-12-29 07:53:08
MaintainerHans Kestler <hans.kestler@uni-ulm.de>
LicenseArtistic-2.0
Version1.2

View on CRAN

Functions

analysis.averageCorrelation Man page
analysis.averageTStatistic Man page
analysis.customOverrepresentation Man page
analysis.globalAncova Man page
analysis.globalTest Man page
analysis.gsea Man page
analysis.overrepresentation Man page
createSummaryTable Man page
evaluateGeneSetUncertainty Man page
filterGeneSets Man page
geneSetAnalysis Man page
GiANT Man page
global Man page
global.ancova Man page
global.overrepresentation Man page
global.test Man page
gls Man page
gls.cor Man page
gls.foldChange Man page
gls.moderateTStatistic Man page
gls.nBinomTest Man page
gls.regression Man page
gls.tStatistic Man page
gsAnalysis Man page
gss Man page
gss.enrichmentScore Man page
gss.fisherExactTest Man page
gss.gsz Man page
gss.maxmean Man page
gss.mean Man page
gss.median Man page
gss.sum Man page
gss.wilcoxonRankTest Man page
hist.gsaResult Man page
mergeProbesForGenes Man page
parseGmt Man page
plotOverrepresentation Man page
plot.uncertaintyResult Man page
predefinedAnalyses Man page
preprocessGeneSets Man page
preprocessGs Man page
significance Man page
significance.permutation Man page
significance.restandardization Man page
significance.sampling Man page
summary.gsaResult Man page
transformation Man page
transformation.abs Man page
transformation.adjust Man page
transformation.adjustAndBinarize Man page
transformation.binarize Man page
transformation.localFdr Man page
transformation.rank Man page
transformation.square Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.