Man pages for GiANT
Gene Set Uncertainty in Enrichment Analysis

countdataExample data
createSummaryTableCreate an overview table for an analysis
evaluateGeneSetUncertaintyQuantify gene set uncertainty
filterGenesetsFiltering of gene sets
geneSetAnalysisMain interface for enrichment analyses.
GiANT-packageEnrichment analysis
globalAnalysisGlobal analyses
glsGene-level statistics
gsAnalysisGene set analysis.
gssGene set statistics
histNull distribution histogram and statistic of the input set...
labelsExample data to label samples in countdata (rows) in two...
mergeProbesForGenesMerge multiple probes for one gene
parseGmtVenn Euler Diagramm
pathwaysExample data for pathways to to gene set enrichtment analyses
plotPlots the results of an uncertainty analysis.
plotOverrepresentationPlot overlap of gene sets and core set
predefinedAnalysesPredefined enrichment analyses
preprocessGeneSetsEliminate unknown genes from gene sets
significanceSignificance assessment
summarySummarize gene set analysis results
transformationTransformations
GiANT documentation built on Sept. 11, 2024, 9:16 p.m.