countdata | Example data |
createSummaryTable | Create an overview table for an analysis |
evaluateGeneSetUncertainty | Quantify gene set uncertainty |
filterGenesets | Filtering of gene sets |
geneSetAnalysis | Main interface for enrichment analyses. |
GiANT-package | Enrichment analysis |
globalAnalysis | Global analyses |
gls | Gene-level statistics |
gsAnalysis | Gene set analysis. |
gss | Gene set statistics |
hist | Null distribution histogram and statistic of the input set... |
labels | Example data to label samples in countdata (rows) in two... |
mergeProbesForGenes | Merge multiple probes for one gene |
parseGmt | Venn Euler Diagramm |
pathways | Example data for pathways to to gene set enrichtment analyses |
plot | Plots the results of an uncertainty analysis. |
plotOverrepresentation | Plot overlap of gene sets and core set |
predefinedAnalyses | Predefined enrichment analyses |
preprocessGeneSets | Eliminate unknown genes from gene sets |
significance | Significance assessment |
summary | Summarize gene set analysis results |
transformation | Transformations |
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