API for GiANT
Gene Set Uncertainty in Enrichment Analysis
| Global functions | |
|---|---|
| GSZ.test.score | Source code |
| GSZ_calc_prior | Source code |
| GiANT | Man page |
| analysis.averageCorrelation | Man page Source code |
| analysis.averageTStatistic | Man page Source code |
| analysis.customOverrepresentation | Man page Source code |
| analysis.globalAncova | Man page Source code |
| analysis.globalTest | Man page Source code |
| analysis.gsea | Man page Source code |
| analysis.overrepresentation | Man page Source code |
| bloxs | Source code |
| blxsplit | Source code |
| count.prob.sum | Source code |
| countdata | Man page |
| createSummaryTable | Man page Source code |
| doGLS | Source code |
| doGSS | Source code |
| doGlobalAnalysis | Source code |
| doSignificanceAssessment | Source code |
| doTransformation | Source code |
| evaluateGeneSetUncertainty | Man page Source code |
| filterGeneSets | Man page Source code |
| geneSetAnalysis | Man page Source code |
| getNeededParameters | Source code |
| global | Man page |
| global.ancova | Man page Source code |
| global.overrepresentation | Man page Source code |
| global.test | Man page Source code |
| gls | Man page |
| gls.cor | Man page Source code |
| gls.foldChange | Man page Source code |
| gls.moderateTStatistic | Man page Source code |
| gls.nBinomTest | Man page Source code |
| gls.regression | Man page Source code |
| gls.tStatistic | Man page Source code |
| gsAnalysis | Man page Source code |
| gss | Man page |
| gss.enrichmentScore | Man page Source code |
| gss.fisherExactTest | Man page Source code |
| gss.gsz | Man page Source code |
| gss.maxmean | Man page Source code |
| gss.mean | Man page Source code |
| gss.median | Man page Source code |
| gss.sum | Man page Source code |
| gss.wilcoxonRankTest | Man page Source code |
| hist.gsaResult | Man page Source code |
| hyge.mean.var | Source code |
| labels | Man page |
| mergeProbesForGenes | Man page Source code |
| parseGmt | Man page Source code |
| pathways | Man page |
| plot.uncertaintyResult | Man page Source code |
| plotOverrepresentation | Man page Source code |
| predefinedAnalyses | Man page |
| preprocessGeneSets | Man page |
| preprocessGs | Man page Source code |
| print.gsAnalysis | Source code |
| significance | Man page |
| significance.permutation | Man page Source code |
| significance.restandardization | Man page Source code |
| significance.sampling | Man page Source code |
| summary.gsaResult | Man page Source code |
| transformation | Man page |
| transformation.abs | Man page Source code |
| transformation.adjust | Man page Source code |
| transformation.adjustAndBinarize | Man page Source code |
| transformation.binarize | Man page Source code |
| transformation.localFdr | Man page Source code |
| transformation.rank | Man page Source code |
| transformation.square | Man page Source code |
