Man pages for GiANT
Gene Set Uncertainty in Enrichment Analysis
| countdata | Example data |
| createSummaryTable | Create an overview table for an analysis |
| evaluateGeneSetUncertainty | Quantify gene set uncertainty |
| filterGenesets | Filtering of gene sets |
| geneSetAnalysis | Main interface for enrichment analyses. |
| GiANT-package | Enrichment analysis |
| globalAnalysis | Global analyses |
| gls | Gene-level statistics |
| gsAnalysis | Gene set analysis. |
| gss | Gene set statistics |
| hist | Null distribution histogram and statistic of the input set... |
| labels | Example data to label samples in countdata (rows) in two... |
| mergeProbesForGenes | Merge multiple probes for one gene |
| parseGmt | Venn Euler Diagramm |
| pathways | Example data for pathways to to gene set enrichtment analyses |
| plot | Plots the results of an uncertainty analysis. |
| plotOverrepresentation | Plot overlap of gene sets and core set |
| predefinedAnalyses | Predefined enrichment analyses |
| preprocessGeneSets | Eliminate unknown genes from gene sets |
| significance | Significance assessment |
| summary | Summarize gene set analysis results |
| transformation | Transformations |
