Provides a simple to use, intuitive, and extensible interface to several stochastic simulation algorithms for generating simulated trajectories of finite population continuoustime model. Currently it implements Gillespie's exact stochastic simulation algorithm (Direct method) and several approximate methods (Explicit tauleap, Binomial tauleap, and Optimized tauleap). The package also contains a library of template models that can be run as demo models and can easily be customized and extended. Currently the following models are included, 'DecayingDimerization' reaction set, linear chain system, logistic growth model, 'Lotka' predatorprey model, RosenzweigMacArthur predatorprey model, 'KermackMcKendrick' SIR model, and a 'metapopulation' SIRS model. PinedaKrch et al. (2008) <doi:10.18637/jss.v025.i12>.
Package details 


Author  Mario PinedaKrch [aut], Robrecht Cannoodt [aut, cre] (<https://orcid.org/000000033641729X>) 
Maintainer  Robrecht Cannoodt <rcannood@gmail.com> 
License  GPL (>= 3) 
Version  0.6.2 
URL  https://github.com/rcannood/GillespieSSA 
Package repository  View on CRAN 
Installation 
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