sysBiolAlg_GlobalFit-class: Class '"sysBiolAlg_GlobalFit"'

In GlobalFit: Bi-Level Optimization of Metabolic Network Models

Description

Class, that builds the bilevel optimization object of algortihm 2.

Objects from the Class

Objects can be created by calls of the form new("sysBiolAlg_GlobalFit", model, LPvariant, useNames, cnames, rnames, pname, scaling, penalties_hin, penalties_ruck, cancel_case_penalty, num_additional_reactions, not_delete_for, not_delete_back, off, on, simple, del_pen_hin, del_pen_ruck, reverse_hin, reverse_hin_penalty, reverse_back, reverse_back_penalty, MaxPenalty, alternatives_list, additional_biomass_metabolites, remove_biomass_metabolites, bio_stoich, use_indicator_constraints, variable_lower_bound, forced_alterations, writeProbToFileName, ...).

Slots

wu:

Object of class "numeric" ~~

wl:

Object of class "numeric" ~~

fnc:

Object of class "integer" ~~

fnr:

Object of class "integer" ~~

problem:

Object of class "optObj" ~~

algorithm:

Object of class "character" ~~

nr:

Object of class "integer" ~~

nc:

Object of class "integer" ~~

fldind:

Object of class "integer" ~~

alg_par:

Object of class "list" ~~

Extends

Class "sysBiolAlg", directly.

Methods

initialize

signature(.Object = "sysBiolAlg_GlobalFit"): ...

Author(s)

Daniel Hartleb

Examples

showClass("sysBiolAlg_GlobalFit")

GlobalFit documentation built on May 2, 2019, 5:07 a.m.