Man pages for GoodFibes
Detection and Reconstruction of Muscle Fibers from diceCT Image Data
| ant.final | Ant muscle fibers finalized |
| ant.raw | Raw ant muscle fibers |
| boundary.check | Check if muscle fiber is close to boundary of muscle |
| check.overlap | Check if muscle fibers are redundant |
| color.scale | A simple wrapper to create colors for a continuous variable |
| crop.stack | Automated imaging cropping |
| equalize.stack | Automated histogram equalization of image state |
| fiber.angle | *Experimental!* Calculating the orientation of muscle fibers |
| fiber.curve | Calculate the relative curvature of muscle fibers |
| fiber.lengths | Calculated the length of smoothed muscle fibers |
| fibers.smoothed | Smoothing of estimated fiber paths |
| fuse.fibers | Fuse incomplete fibers |
| fuse.fibers.auto | Automated repeated fusing of fiber paths |
| get.whites | An internal function determining grayscale values |
| good.fibes | Automated detection of muscle fibers from diceCT scans |
| GoodFibes-package | Detection and Reconstruction of Muscle Fibers from diceCT... |
| hemisphere.points | Finding end points of possible paths |
| muscle.plot | Plot a single muscle fiber |
| muscle.plot.multi | Plot multi muscle fibers with a muscle outline |
| muscle.plot.stl | Plot and export muscle fibers to stl |
| pointsGenerator | Line points generator |
| quality.check | Quality testing of possible muscle fibers detected by... |
| sequencePlot | Plot the path of a muscle fiber generated using good.fibes |
| thresholdPlot | Plot image from diceCT stack using thresholding |
