ant.final: Ant muscle fibers finalized
In GoodFibes: Detection and Reconstruction of Muscle Fibers from diceCT Image Data
ant.final R Documentation
Ant muscle fibers finalized
Description
Muscle fibers reconstructed from the mandibular muscle of an ant (Monomorium pharaonis) (post processing).
Format
A list with 198 entries, each representing a muscle fiber reconstructed from an image stack. Each entry contains $fiber.points, the raw reconstructed fiber paths, and $fiber.smoothed, the smoothed paths.
Details
These fibers were reconstructed using good.fibes, checked for poor fiber paths using quality.check, and had fibers fused and merged using fuse.fibers and check.overlap. Also see "ant.raw" for the initial fiber paths from good.fibes.
Source
Fiber paths were generated from the ant dataset in Katzke et al (2022). Original image files available upon request.
References
Katzke, J., Puchenkov, P., Stark, H., and Economo, E. 2022. A Roadmap to Reconstructing Muscle Architecture from CT Data. Integrative Organismal Biology 4(1): 1-16.
Examples
data(ant.final)
fl<-fiber.lengths(ant.final, res = 0.000673107, df = 1)
GoodFibes documentation built on Aug. 19, 2023, 1:06 a.m.
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| ant.final | R Documentation |
Ant muscle fibers finalized
Description
Muscle fibers reconstructed from the mandibular muscle of an ant (Monomorium pharaonis) (post processing).
Format
A list with 198 entries, each representing a muscle fiber reconstructed from an image stack. Each entry contains $fiber.points, the raw reconstructed fiber paths, and $fiber.smoothed, the smoothed paths.
Details
These fibers were reconstructed using good.fibes, checked for poor fiber paths using quality.check, and had fibers fused and merged using fuse.fibers and check.overlap. Also see "ant.raw" for the initial fiber paths from good.fibes.
Source
Fiber paths were generated from the ant dataset in Katzke et al (2022). Original image files available upon request.
References
Katzke, J., Puchenkov, P., Stark, H., and Economo, E. 2022. A Roadmap to Reconstructing Muscle Architecture from CT Data. Integrative Organismal Biology 4(1): 1-16.
Examples
data(ant.final)
fl<-fiber.lengths(ant.final, res = 0.000673107, df = 1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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