color.scale: A simple wrapper to create colors for a continuous variable

In GoodFibes: Detection and Reconstruction of Muscle Fibers from diceCT Image Data

A simple wrapper to create colors for a continuous variable

Description

For any continuous variable like fiber length, produces a vector that can be used in plotting functions for the col argument. Uses colorRampPalette.

Usage

color.scale(fl, color1, color2)

Arguments

fl	A numeric vector containing a measurement for each fiber in a fiber list.
color1	A character value for the color for small values of the variable
color2	A character value for the color for large values of the variable

Value

A vector with color values for each fiber

See Also

muscle.plot.stl

Examples

data(ant.final)
fl<-fiber.lengths(ant.final, res = 0.000673107, df=1)

cols<-color.scale(fl, "blue", "green")
muscle.plot.stl(ant.final, res = 0.000673107, cols = cols, mirror.axis = TRUE, df=1)

GoodFibes documentation built on Aug. 19, 2023, 1:06 a.m.