Man pages for HBP
Hi-C BED File Analysis Pipeline
| calculate_omiccircos_data | output the interaction that our bed interact with ourbed. |
| calculate_omiccircos_data_solo | help calculate_omiccircos_data to finish its work |
| check_bed_bin | process the bed file data to bin |
| choose_chr_bed | choose which chrom from the BED file |
| circos_plot | Visualization of interactions and tracks |
| convert_bed_to_matrix | convert the bed file to matrix file for the next analysis |
| find_bed_to_bed_interaction | find the interaction between specific sites |
| find_bed_to_bed_interaction_solo | help find_bed_to_bed_interaction finish its work |
| generate_enzyme_file | generate enzyme file |
| generate_matrix | generate matrix files |
| if_distribution_analysis | analyse the interaction frequency distribution |
| load_all_wig | the function to load wig file |
| load_bed | the function to load bed file |
| load_bed_wig | the function to load wig file in the specific sites |
| load_wig | the function to load tracks |
| network_analysis | Interaction network topological analysis |
| run_hicpro | run the hic-pro |
| statistical_analysis | Statistical significance tests |
| whitered | generate the color of heatmap |
