calculate_omiccircos_data | output the interaction that our bed interact with ourbed. |
calculate_omiccircos_data_solo | help calculate_omiccircos_data to finish its work |
check_bed_bin | process the bed file data to bin |
choose_chr_bed | choose which chrom from the BED file |
circos_plot | Visualization of interactions and tracks |
convert_bed_to_matrix | convert the bed file to matrix file for the next analysis |
find_bed_to_bed_interaction | find the interaction between specific sites |
find_bed_to_bed_interaction_solo | help find_bed_to_bed_interaction finish its work |
generate_enzyme_file | generate enzyme file |
generate_matrix | generate matrix files |
if_distribution_analysis | analyse the interaction frequency distribution |
load_all_wig | the function to load wig file |
load_bed | the function to load bed file |
load_bed_wig | the function to load wig file in the specific sites |
load_wig | the function to load tracks |
network_analysis | Interaction network topological analysis |
run_hicpro | run the hic-pro |
statistical_analysis | Statistical significance tests |
whitered | generate the color of heatmap |
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