generate_enzyme_file: generate enzyme file
In HBP: Hi-C BED File Analysis Pipeline

help user generate enzyme file

`enzyme`	the restriction enzyme name.
`enzymesite`	the restriction enzyme cutting sites
`chrom_file`	the chromatin information file
`enzymedir`	the output dir of this function
`enzymeoverhangs5`	5' overhangs on the DNA resulted from the cutting
`genomeName`	the name of genome

this function is used to generate restriction fragment annotation files. and some annotation files were generated in https://github.com/hechao0407/HBP/tree/master/annotation

can be used as following command: generate_enzyme_file(enzyme="DpnII",enzymesite="GATC",chrom_file="chrom_dm3.sizes",enzymedir="annotation",enzymeoverhangs5=0,genomeName="dm3")

HBP documentation built on July 7, 2017, 9:02 a.m.