HDDesign: Sample Size Calculation for High Dimensional Classification Study

Determine the sample size requirement to achieve the target probability of correct classification (PCC) for studies employing high-dimensional features. The package implements functions to 1) determine the asymptotic feasibility of the classification problem; 2) compute the upper bounds of the PCC for any linear classifier; 3) estimate the PCC of three design methods given design assumptions; 4) determine the sample size requirement to achieve the target PCC for three design methods.

Author
Meihua Wu <meihuawu@umich.edu>, Brisa N. Sanchez <brisa@umich.edu>, Peter X.K. Song <pxsong@umich.edu>, Raymond Luu <raluu@umich.edu>, Wen Wang <wangwen@umich.edu>
Date of publication
2016-06-11 09:37:25
Maintainer
Brisa N. Sanchez <brisa@umich.edu>
License
GPL-2
Version
1.1

View on CRAN

Man pages

cv_method
Formula-based PCC of a CV-based classifier
cv_method_corr
Formula-based method to calculate the PCC of a CV-based...
cv_method_MC
MC simulation-based method to calculate the PCC of a CV-based...
cv_method_MC_corr
MC simulation-based method to calculate the PCC of a CV-based...
ds_method
Estimate PCC by DS Method
hct_beta
Alternative HCT Procedure to Choose P-Value Threshold Based...
hct_empirical
Original HCT Procedure to Choose P-Value Threshold for...
hct_method
Estimate PCC of HCT Classifiers
hct_method_corr
Estimate PCC of HCT Classifiers via implementation of Monte...
hct_method_MC
Estimate PCC of HCT Classifiers via implementation of Monte...
hct_method_MC_corr
Estimate PCC of HCT Classifiers constructed with correlated...
HDDesign-package
Sample Size Calculation for High Dimensional Classification...
ideal_pcc
Determine the Ideal PCC
samplesize
Determine the Sample Size Requirement
which.region
Determine the Feasibility Region

Files in this package

HDDesign
HDDesign/inst
HDDesign/inst/doc
HDDesign/inst/doc/HDDesign-manual.pdf
HDDesign/NAMESPACE
HDDesign/R
HDDesign/R/hct_method_corr.R
HDDesign/R/cv_method_MC.R
HDDesign/R/cv_method_single_MC.R
HDDesign/R/phi.R
HDDesign/R/hct_empirical.R
HDDesign/R/hct_method_MC_corr.R
HDDesign/R/gen_data.R
HDDesign/R/cv_method.R
HDDesign/R/cv_method_single_MC_corr.R
HDDesign/R/ideal_pcc.R
HDDesign/R/is.region1.R
HDDesign/R/ideal_pcc_corr.R
HDDesign/R/which.region.R
HDDesign/R/cv_method_single.R
HDDesign/R/hct_method_single_MC.R
HDDesign/R/get_cv_pcc_single.R
HDDesign/R/get_pcc_ss.R
HDDesign/R/hct_method.R
HDDesign/R/Q_func.R
HDDesign/R/cv_method_single_corr.R
HDDesign/R/get_weight_zp.R
HDDesign/R/gen_data_corr.R
HDDesign/R/hct_hybrid.R
HDDesign/R/get_ds_pcc_alpha.R
HDDesign/R/get_cv_pcc.R
HDDesign/R/samplesize.R
HDDesign/R/hct_method_single_corr.R
HDDesign/R/cv_method_corr.R
HDDesign/R/ds_method.R
HDDesign/R/which.region.rb.R
HDDesign/R/hct_method_single.R
HDDesign/R/hct_method_MC.R
HDDesign/R/tr.R
HDDesign/R/beta_prob.R
HDDesign/R/hct_method_single_MC_corr.R
HDDesign/R/hct_beta.R
HDDesign/R/gen_sim_pvalue_null.R
HDDesign/R/select_cv_data.R
HDDesign/R/rho.R
HDDesign/R/cv_method_MC_corr.R
HDDesign/R/is.region2.R
HDDesign/R/dot.R
HDDesign/MD5
HDDesign/DESCRIPTION
HDDesign/man
HDDesign/man/cv_method_MC.Rd
HDDesign/man/which.region.Rd
HDDesign/man/cv_method_corr.Rd
HDDesign/man/ds_method.Rd
HDDesign/man/hct_method_corr.Rd
HDDesign/man/cv_method_MC_corr.Rd
HDDesign/man/hct_empirical.Rd
HDDesign/man/cv_method.Rd
HDDesign/man/hct_method.Rd
HDDesign/man/ideal_pcc.Rd
HDDesign/man/hct_method_MC.Rd
HDDesign/man/samplesize.Rd
HDDesign/man/HDDesign-package.Rd
HDDesign/man/hct_method_MC_corr.Rd
HDDesign/man/hct_beta.Rd