R/data.R

In HGNChelper: Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

#' All current and withdrawn MGI mouse symbols and Excel mogrifications.
#'
#' A dataframe with the first column providing a gene symbol or known alias
#' (including withdrawn symbols), second column providing the approved MOUSE symbol.
#'
#' \itemize{
#'   \item Symbol. All valid, Excel-mogrified, and withdrawn symbols
#'   \item Approved.Symbol. Approved symbols.
#' }
#' @examples 
#' data("mouse.table", package="HGNChelper")
#' head(mouse.table)
#' @source Extracted from \url{http://www.informatics.jax.org/downloads/reports/MGI_EntrezGene.rpt} and 
#' system.file("extdata/HGNChelper_mog_map_MGI_AMC_2016_03_30.csv", package="HGNChelper")
"mouse.table"

#' All current and withdrawn HGNC gene symbols and Excel mogrifications.
#'
#' A dataframe with the first column providing a gene symbol or known alias
#' (including withdrawn symbols), second column providing the approved HGNC 
#' human gene symbol.
#'
#' \itemize{
#'   \item Symbol. All valid, Excel-mogrified, and withdrawn symbols
#'   \item Approved.Symbol. Approved symbols.
#' }
#' @examples 
#' data("hgnc.table", package="HGNChelper")
#' head(hgnc.table)
#' @source Extracted from 
#' \url{ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/hgnc_complete_set.txt}
#'  and 
#' system.file("extdata/mog_map.csv", package="HGNChelper")
"hgnc.table"