HLSMdiag: Function to conduct diagnostics the MCMC chain from a random...
In HLSM: Hierarchical Latent Space Network Model

Description Usage Arguments Value Author(s)

View source: R/modular_diags.R

Function to compute and report diagnostic plots and statistics for a single or multiple HLSM objects.

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HLSMdiag(object, burnin = 0,
         diags = c('psrf', 'raftery', 'traceplot', 'autocorr'),
         col = 1:6, lty = 1)

`object`	object or list of objects of class 'HLSM' returned by `HLSMrandomEf()` or `HLSMfixedEF()`
`burnin`	numeric value to burn the chain while extracting results from the 'HLSM'object. Default is `burnin = 0`.
`diags`	a character vector that is a subset of `c('psrf', 'raftery', 'traceplot', 'autocorr')`. Default returns all diagnostics. If only a single chain is supplied in object, `'psrf'` throws a warning if explicitly requested by user.
`col`	a character or integer vector specifying the colors for the traceplot and autocorr plot
`lty`	a character or integer vector specifying the linetype for the traceplot and autocorr plot

Returns an object of class "HLSMdiag". It is a list that contains variable-level diagnostic tables from either or both of the raftery diagnostic and psrf diagnostic. When returned to the console, a summary table of the diagnostics will be printed instead of the list representation of the object.

`call`	the matched call.
`raftery`	list of matrices of suggested niters, burnin, and thinning for each chain.
`psrf`	list containing `psrf`, a matrix of psrf estimates and upper limits for variable, and `mpsrf` the multivariate psrf estimate.