Description Usage Arguments Value References
plotHMM
uses HMM output via calc.track
to make simple plots of
calculated track and behavior state
1 2 |
distr |
is output array from |
track |
is output dataframe from |
dateVec |
is vector of dates from tag to pop-up location by day. |
ptt |
is unique ID for individual tag dataset |
known |
is 3 column data frame containing date, lat, lon of known movement track. This is only useful for comparing HMMoce results to known track collected by SPOT or GPS, for example. Default is NULL. |
resid |
is logical indicating whether you want to include a residual plot. This is not yet functional. |
behav.pts |
is logical indicating whether to plot points in the resulting map colored by behav state. |
save.plot |
is logical indicating whether you want the plot written to
disk using |
NULL. A plot is rendered on screen or written to disk.
Pedersen MW, Patterson TA, Thygesen UH, Madsen H (2011) Estimating animal behavior and residency from movement data. Oikos 120:1281-1290. doi: 10.1111/j.1600-0706.2011.19044.x
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