plotRD: Plot RD results

In HMMoce: Improved Analysis of Marine Animal Movement Data Using Hidden Markov Models

Description

plotRD uses HMM output via calc.track to calculate and plot residency distributions for each behavior state and combined data

Usage

plotRD(distr, track, ptt, known = NULL, g, xlims, ylims, makePlot = TRUE,
  save.plot = FALSE)

Arguments

distr	is output array from hmm.smoother
track	is output dataframe from calc.track
ptt	is individual identification number
known	is 3 column data frame containing date, lat, lon of known movement track. This is only useful for comparing HMMoce results to known track collected by SPOT or GPS, for example. Default is NULL.
g	grid from setup.grid
xlims	a vector of length 2 indicating longitude limits (-180 to 180).
ylims	a vector of length 2 indicating latitude limits
makePlot	is logical indicating whether to make a plot of the RD
save.plot	is logical indicating whether you want the plot written to disk using pdf.

Value

a list of one raster layer for the combined RD and one raster brick (2 layers) for the individual behavior RDs.

HMMoce documentation built on Nov. 17, 2017, 5:57 a.m.