API for Haplin
Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes
| Global functions | |
|---|---|
| .onLoad | Source code |
| JohnsonFit | Man page |
| as.dframe | Source code |
| cbindFiles | Man page Source code |
| coef.haplin | Source code |
| coef.haptable | Source code |
| coef.haptable.hapSlide | Source code |
| coef.tri.glm | Source code |
| convertPed | Man page Source code |
| create.missingness.matrix | Man page Source code |
| dframe | Source code |
| dumpTab | Source code |
| f.HWE | Source code |
| f.HWE.design | Source code |
| f.HWE.design0 | Source code |
| f.HWE0 | Source code |
| f.QQconf | Source code |
| f.Rplot | Source code |
| f.a.asymp | Source code |
| f.aggregate | Source code |
| f.args.from.info | Source code |
| f.args.from.info0 | Source code |
| f.b.asymp | Source code |
| f.bdiag | Source code |
| f.beta.haplo.freq.asymp | Source code |
| f.catch | Source code |
| f.catch0 | Source code |
| f.check.pars | Source code |
| f.check.pars0 | Source code |
| f.check.unique.ids | Man page Source code |
| f.coefnames | Source code |
| f.convert.matrix.ff | Man page Source code |
| f.create.snp.names | Man page Source code |
| f.create.tag | Source code |
| f.data | Source code |
| f.data.ready | Source code |
| f.data0 | Source code |
| f.debug.pvalues | Source code |
| f.design.get | Source code |
| f.design.make | Source code |
| f.expand.alleles | Source code |
| f.extract.ff.numeric | Man page Source code |
| f.extract.freq | Source code |
| f.fill.effects | Source code |
| f.final.loglike | Source code |
| f.freq.table | Source code |
| f.get.data | Source code |
| f.get.gen.data.cols | Man page Source code |
| f.get.marker.names | Source code |
| f.get.which.gen.el | Source code |
| f.get.which.gen.el.names | Source code |
| f.grid.asymp | Source code |
| f.gwaa.to.ff | Source code |
| f.hapArg | Source code |
| f.hapSim | Source code |
| f.hapTests | Source code |
| f.haptable.list | Source code |
| f.insert.row | Source code |
| f.jackknife | Source code |
| f.like.ratio | Source code |
| f.make.index | Source code |
| f.make.out.filename | Source code |
| f.mat.asymp | Source code |
| f.match | Source code |
| f.matrix.to.list | Source code |
| f.ped.to.mfc.new | Source code |
| f.ped.to.mfc0 | Source code |
| f.plot.effects | Source code |
| f.pos.in.grid | Source code |
| f.pos.match | Source code |
| f.pos.to.haplocomb | Source code |
| f.post.chisq | Source code |
| f.post.contrasts | Source code |
| f.post.diff | Source code |
| f.post.poo.diff | Source code |
| f.posttest | Source code |
| f.preliminary.freq.new | Source code |
| f.preliminary.freq.new0 | Source code |
| f.prep.data | Source code |
| f.prep.data.parallel | Source code |
| f.prep.dataout | Source code |
| f.prep.pedIndex | Source code |
| f.prep.reference | Source code |
| f.printlist | Source code |
| f.prob | Source code |
| f.prob.asymp | Source code |
| f.rand.geno | Source code |
| f.read.data | Source code |
| f.redistribute | Source code |
| f.repl.thin | Source code |
| f.repl.thin0 | Source code |
| f.scoretest | Source code |
| f.sel.haplos | Source code |
| f.sel.markers | Source code |
| f.sep.data | Source code |
| f.sep.data0 | Source code |
| f.sim | Source code |
| f.sort.alleles.cc | Source code |
| f.sort.alleles.cc0 | Source code |
| f.sort.alleles.new | Source code |
| f.sort.alleles.new0 | Source code |
| f.split.matrix | Source code |
| f.split.vector | Source code |
| f.suest | Source code |
| f.var.covar | Source code |
| f.var.covar.asymp | Source code |
| f.windows | Source code |
| finishParallelRun | Man page Source code |
| genDataGetPart | Man page Source code |
| genDataLoad | Man page Source code |
| genDataPreprocess | Man page Source code |
| genDataRead | Man page Source code |
| getChildren | Man page Source code |
| getDyads | Man page Source code |
| getFathers | Man page Source code |
| getFullTriads | Man page Source code |
| getMothers | Man page Source code |
| gxe | Man page Source code |
| hapCovar | Source code |
| hapPower | Man page Source code |
| hapPowerAsymp | Man page Source code |
| hapRelEff | Man page Source code |
| hapRun | Man page Source code |
| hapSim | Man page Source code |
| haplin | Man page Source code |
| haplin0 | Source code |
| haplinSlide | Man page Source code |
| haplinSlide0 | Source code |
| haplinStrat | Man page Source code |
| haplinStrat0 | Source code |
| haptable | Man page Source code |
| haptable.default | Source code |
| haptable.gxe | Source code |
| haptable.haplin | Source code |
| haptable.haplinSlide | Source code |
| haptable.haplinStrat | Source code |
| initParallelRun | Man page Source code |
| lineByLine | Man page Source code |
| lineConvert | Source code |
| make.ff.data.out | Source code |
| nfam | Man page Source code |
| nindiv | Man page Source code |
| nsnps | Man page Source code |
| output | Man page Source code |
| pJohnson | Man page |
| pQQ | Man page Source code |
| pedToHaplin | Man page Source code |
| plot | Man page Man page Man page |
| plot.haplin | Man page Source code |
| plot.haplinSlide | Man page Source code |
| plot.haplinStrat | Man page Source code |
| plot.haptable | Man page Source code |
| plotPValues | Man page Source code |
| postTest | Source code |
| print.HWE.test | Source code |
| print.gxe | Source code |
| print.haplin | Man page Source code |
| print.haplin.data | Source code |
| print.haplin.ready | Source code |
| print.haplinSlide | Source code |
| print.haplinStrat | Source code |
| print.info | Source code |
| print.suest | Source code |
| print.summary.haplin | Man page Source code |
| rbindFiles | Man page Source code |
| showGen | Man page Source code |
| showPheno | Man page Source code |
| showSNPnames | Man page Source code |
| snpPos | Man page Source code |
| snpPower | Man page Source code |
| snpSampleSize | Man page Source code |
| suest | Man page Source code |
| summary.haplin | Man page Source code |
| summary.haplinStrat | Source code |
| summary.tri.glm | Source code |
| textlabel | Source code |
| toDataFrame | Man page Source code |
