API for Haplin
Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes

Global functions
as.dframe Source code
cbindFiles Man page Source code
coef.haplin Source code
coef.haptable Source code
coef.haptable.hapSlide Source code
coef.tri.glm Source code
convertPed Man page Source code
dframe Source code
dumpTab Source code
f.HWE Source code
f.HWE.design Source code
f.HWE.design0 Source code
f.HWE0 Source code
f.QQconf Source code
f.Rplot Source code
f.a.asymp Source code
f.aggregate Source code
f.args.from.info Source code
f.args.from.info0 Source code
f.b.asymp Source code
f.bdiag Source code
f.beta.haplo.freq.asymp Source code
f.catch Source code
f.catch0 Source code
f.check.pars Source code
f.check.pars0 Source code
f.coefnames Source code
f.convert.matrix.ff Man page Source code
f.create.tag Source code
f.data Source code
f.data.ready Source code
f.data0 Source code
f.debug.pvalues Source code
f.design.get Source code
f.design.make Source code
f.expand.alleles Source code
f.extract.ff.numeric Man page Source code
f.extract.freq Source code
f.fill.effects Source code
f.final.loglike Source code
f.freq.table Source code
f.get.data Source code
f.get.gen.data.cols Man page Source code
f.get.marker.names Source code
f.get.which.gen.el Source code
f.get.which.gen.el.names Source code
f.grid.asymp Source code
f.gwaa.to.ff Source code
f.hapArg Source code
f.hapSim Source code
f.hapTests Source code
f.haptable.list Source code
f.insert.row Source code
f.jackknife Source code
f.like.ratio Source code
f.make.index Source code
f.make.out.filename Source code
f.mat.asymp Source code
f.match Source code
f.matrix.to.list Source code
f.ped.to.mfc.new Source code
f.ped.to.mfc0 Source code
f.plot.effects Source code
f.pos.in.grid Source code
f.pos.match Source code
f.pos.to.haplocomb Source code
f.post.chisq Source code
f.post.contrasts Source code
f.post.diff Source code
f.post.poo.diff Source code
f.posttest Source code
f.preliminary.freq.new Source code
f.preliminary.freq.new0 Source code
f.prep.data Source code
f.prep.data.parallel Source code
f.prep.dataout Source code
f.prep.pedIndex Source code
f.prep.reference Source code
f.printlist Source code
f.prob Source code
f.prob.asymp Source code
f.rand.geno Source code
f.read.data Source code
f.redistribute Source code
f.repl.thin Source code
f.repl.thin0 Source code
f.scoretest Source code
f.sel.haplos Source code
f.sel.markers Source code
f.sep.data Source code
f.sep.data0 Source code
f.sim Source code
f.sort.alleles.cc Source code
f.sort.alleles.cc0 Source code
f.sort.alleles.new Source code
f.sort.alleles.new0 Source code
f.split.matrix Source code
f.split.vector Source code
f.suest Source code
f.var.covar Source code
f.var.covar.asymp Source code
f.windows Source code
finishParallelRun Man page Source code
genDataGetPart Man page Source code
genDataLoad Man page Source code
genDataPreprocess Man page Source code
genDataRead Man page Source code
gxe Man page Source code
hapCovar Source code
hapPower Man page Source code
hapPowerAsymp Man page Source code
hapRun Man page Source code
hapSim Man page Source code
haplin Man page Source code
haplin0 Source code
haplinSlide Man page Source code
haplinSlide0 Source code
haplinStrat Man page Source code
haplinStrat0 Source code
haptable Man page Source code
haptable.default Source code
haptable.gxe Source code
haptable.haplin Source code
haptable.haplinSlide Source code
haptable.haplinStrat Source code
initParallelRun Man page Source code
lineByLine Man page Source code
lineConvert Source code
make.ff.data.out Source code
onLoad Source code
output Man page Source code
pQQ Man page Source code
pedToHaplin Man page Source code
plot Man page Man page Man page
plot.haplin Man page Source code
plot.haplinSlide Man page Source code
plot.haplinStrat Man page Source code
plot.haptable Man page Source code
plotPValues Man page Source code
postTest Source code
print.HWE.test Source code
print.gxe Source code
print.haplin Man page Source code
print.haplin.data Source code
print.haplin.ready Source code
print.haplinSlide Source code
print.haplinStrat Source code
print.info Source code
print.suest Source code
print.summary.haplin Man page Source code
rbindFiles Man page Source code
snpPos Man page Source code
snpPower Man page Source code
snpSampleSize Man page Source code
suest Man page Source code
summary.haplin Man page Source code
summary.haplinStrat Source code
summary.tri.glm Source code
textlabel Source code
toDataFrame Man page Source code
Haplin documentation built on May 28, 2018, 1:04 a.m.