Heritability of Gene Expression for Next-Generation Sequencing

computeVPC.CP | Calculate the compound Poisson (CP) variance partition... |

computeVPC.NB | Calculate the negative binomial (NB) variance partition... |

fitComputeVPC.lmer | Fit linear mixed models (LMM) and compute the VPC values for... |

fit.CP | Fit compound Poisson mixed effect models (CPMM) for one or... |

fit.NB | Fit negative binomial mixed models (NBMM) for one or more... |

getBootCI | Compute variance partition coefficition (VPC) confidence... |

getReadMatrix.CP | Simulate a read matrix from compound Poisson mixed effect... |

getReadMatrix.NB | Simulate a count matrix from negative binomial mixed effect... |

para_cp | Parameter matrix obtained from simData by fitting CPMM. |

para_nb | Parameter matrix obtained from simData by fitting NBMM. |

simData | A simulated sequencing dataset. |

simData_voom | Voom transformed version of simData. |

simData_vst | Variance stabilize transformed version of simData. |

strains | List of strain names for the samples. |

weights_voom | Weights used in the voom transformation. |

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