HiCblock: Systematic Analysis of Architectural Proteins and Functional Elements in Blocking Long-Range Contacts Between Loci

Here we propose a model to systematically analyze the roles of architectural proteins and functional elements in blocking long-range contacts between loci. The proposed model does not rely on topologically associating domain (TAD) mapping from Hi-C data. Instead of testing the enrichment or influence of protein binding at TAD borders, the model directly estimates the blocking effect of proteins on long-range contacts between flanking loci, making the model intuitive and biologically meaningful.

Package details

AuthorRaphael Mourad
MaintainerRaphael Mourad <[email protected]>
LicenseGPL-2
Version1.4
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("HiCblock")

Try the HiCblock package in your browser

Any scripts or data that you put into this service are public.

HiCblock documentation built on April 19, 2018, 1:04 a.m.