HiCfeat: Multiple Logistic Regression for 3D Chromatin Domain Border Analysis

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We propose a multiple logistic regression model to assess the influences of genomic features such as DNA-binding proteins and functional elements on topological domain borders.

Author
Raphael Mourad
Date of publication
2016-09-25 08:05:27
Maintainer
Raphael Mourad <raphael.mourad@ibcg.biotoul.fr>
License
GPL-2
Version
1.2

View on CRAN

Man pages

borderAnalysisFun
Multivariate enrichment test for chromatin domain borders
dataExample
Read chromatin domain bed file
HiCfeat-internal
Compute average value of a genomic feature for each bin.
HiCfeat-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("HiCfeat")}
readDomBed
Read chromatin domain bed file
readGFBed
Read genomic feature bed file
readGFWig
Read genomic feature bigwig file

Files in this package

HiCfeat
HiCfeat/inst
HiCfeat/inst/extdata
HiCfeat/inst/extdata/BEAF32_Kc167_CS_dm3.bed
HiCfeat/inst/extdata/TAD_Corces_1kb_type_p1.bed
HiCfeat/NAMESPACE
HiCfeat/data
HiCfeat/data/dataExample.RData
HiCfeat/R
HiCfeat/R/BorderAnalysisFun.R
HiCfeat/R/BorderAnalysisMiscFun.R
HiCfeat/MD5
HiCfeat/build
HiCfeat/build/partial.rdb
HiCfeat/DESCRIPTION
HiCfeat/man
HiCfeat/man/HiCfeat-internal.Rd
HiCfeat/man/borderAnalysisFun.Rd
HiCfeat/man/readGFWig.Rd
HiCfeat/man/readDomBed.Rd
HiCfeat/man/dataExample.Rd
HiCfeat/man/HiCfeat-package.Rd
HiCfeat/man/readGFBed.Rd