HiCfeat: Multiple Logistic Regression for 3D Chromatin Domain Border Analysis

We propose a multiple logistic regression model to assess the influences of genomic features such as DNA-binding proteins and functional elements on topological domain borders.

Install the latest version of this package by entering the following in R:
install.packages("HiCfeat")
AuthorRaphael Mourad
Date of publication2016-09-25 08:05:27
MaintainerRaphael Mourad <raphael.mourad@ibcg.biotoul.fr>
LicenseGPL-2
Version1.2

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Files

inst
inst/extdata
inst/extdata/BEAF32_Kc167_CS_dm3.bed
inst/extdata/TAD_Corces_1kb_type_p1.bed
NAMESPACE
data
data/dataExample.RData
R
R/BorderAnalysisFun.R R/BorderAnalysisMiscFun.R
MD5
build
build/partial.rdb
DESCRIPTION
man
man/HiCfeat-internal.Rd man/borderAnalysisFun.Rd man/readGFWig.Rd man/readDomBed.Rd man/dataExample.Rd man/HiCfeat-package.Rd man/readGFBed.Rd

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