readGFWig: Read genomic feature bigwig file

In HiCfeat: Multiple Logistic Regression for 3D Chromatin Domain Border Analysis

Description

Function to import a genomic feature wig or bigWig file. The file can contain for instance normalized ChIP-seq values (log2(ChIP/Input) values).

Usage

readGFWig(GFWigFile, seqInfoChr)

Arguments

GFWigFile	The name of the wig or bigWig file. If it does not contain an absolute path, the file name is relative to the current working directory.
seqInfoChr	A Seqinfo object for the corresponding genome.

Value

A GRanges object is returned.

Author(s)

Raphael Mourad

Examples

# Same use as for readGFBed(). An example wig or bigWig file is not provided in the package 
# because these files have large memory sizes.

HiCfeat documentation built on May 2, 2019, 2:11 a.m.