plotBPC: plotBPC.

In HiResTEC: Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data

plotBPC.

Description

plotBPC will plot for each item of a list of result-ojects from getMultipleBPC the BPC traces and the spectrum at the scan where the summed intensity of all ions is max.

Usage

plotBPC(
  bpc = NULL,
  mfrow = NULL,
  skip_plots = NULL,
  ylim = NULL,
  col = NULL,
  ids = NULL,
  type = "both"
)

Arguments

bpc	A bpc object (list of intensity matrixes, rt x mz, including several attributes as attached by getMultipleBPC).
mfrow	Specify mfrow explicitely (is optimized internally if NULL to cover n=length(bpc)).
skip_plots	Allows to block certain subplots in the mfrow matrix to bettern align replicates.
ylim	Can be specified specifically, will be adjusted to overall min/max otherwise.
col	Specific color vector for masses may be provided.
ids	Specific plot ids may be explicitely provided.
type	Switch between co-plot of BPC and Spectrum ("both") or BPC alone ("bpc").

Details

not yet

Value

A plot to the graphics device and NULL as invisible.

Examples

# load example raw data
data(res_list)
plotBPC(bpc = res_list[[1]][["bpc"]][c(1:2, 13:14)])

HiResTEC documentation built on March 7, 2023, 5:47 p.m.