setPriors.Hmsc: setPriors.Hmsc

In Hmsc: Hierarchical Model of Species Communities

setPriors.Hmsc

Description

Sets or resets priors to the Hmsc object

Usage

## S3 method for class 'Hmsc'
setPriors(
  hM,
  V0 = NULL,
  f0 = NULL,
  mGamma = NULL,
  UGamma = NULL,
  aSigma = NULL,
  bSigma = NULL,
  nuRRR = NULL,
  a1RRR = NULL,
  b1RRR = NULL,
  a2RRR = NULL,
  b2RRR = NULL,
  rhopw = NULL,
  setDefault = FALSE,
  ...
)

Arguments

hM	a fitted Hmsc model object
V0	scale matrix in the Wishart prior distribution for the V matrix
f0	number of degrees of freedom in the Wishart prior distribution for the V matrix
mGamma	mean for the prior multivariate Gaussian distribution for Gamma parameters
UGamma	covariance matrix for the prior multivariate Gaussian distribution for Gamma parameters
aSigma	shape parameter for the prior gamma distribution for the variance parameter, only for normal & lognormal Poisson models
bSigma	rate parameter for the prior gamma distribution for the variance parameter, only for normal & lognormal Poisson models
nuRRR, a1RRR, b1RRR, a2RRR, b2RRR	parameters of the multiplicative gamma process shrinking prior for reduced rank regression
rhopw	discrete grid prior for phylogenetic signal, should be a matrix of 2 columns
setDefault	logical indicating whether default priors should be used
...	other parameters passed to the function.

Value

Modified Hmsc object

Hmsc documentation built on Aug. 11, 2022, 5:11 p.m.