A Bay Area high level phylogenetic analysis package mostly using the birth-death process. Analysis of species tree branching times and simulation of species trees under a number of different time variable birth-death processes. Analysis of gene tree species tree reconciliations and simulations of gene trees in species trees.
|Author||Nathaniel Malachi Hallinan|
|Date of publication||2012-07-30 04:09:01|
|Maintainer||Nathaniel Malachi Hallinan <email@example.com>|
get.recon.1: Internal Functions
HyPhy-package: Macroevolutionary phylogentic analysis of species trees and...
recon.score: Duplications and losses for gene tree in a species tree
requiprobable: Sample trees from an equiprobable labeled, semi-labeled or...
rgenetree: Samples gene family trees that evolved on a species tree with...