HyPhy: Macroevolutionary phylogentic analysis of species trees and gene trees
Version 1.0

A Bay Area high level phylogenetic analysis package mostly using the birth-death process. Analysis of species tree branching times and simulation of species trees under a number of different time variable birth-death processes. Analysis of gene tree species tree reconciliations and simulations of gene trees in species trees.

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AuthorNathaniel Malachi Hallinan
Date of publication2012-07-30 04:09:01
MaintainerNathaniel Malachi Hallinan <nmhallinan@gmail.com>
LicenseGPL-2
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("HyPhy")

Man pages

get.recon.1: Internal Functions
HyPhy-package: Macroevolutionary phylogentic analysis of species trees and...
recon.score: Duplications and losses for gene tree in a species tree
requiprobable: Sample trees from an equiprobable labeled, semi-labeled or...
rgenetree: Samples gene family trees that evolved on a species tree with...

Functions

HyPhy Man page
HyPhy-package Man page
get.recon.1 Man page Source code
recon.score Man page Source code
requiprobable Man page Source code
rgenetree Man page Source code

Files

MD5
R
R/rgenetree.R
R/requiprobable.R
R/recon.score.R
R/get.recon.1.R
NAMESPACE
man
man/rgenetree.Rd
man/requiprobable.Rd
man/recon.score.Rd
man/HyPhy-package.Rd
man/get.recon.1.Rd
DESCRIPTION
HyPhy documentation built on May 20, 2017, 4:44 a.m.