get.recon.1: Internal Functions
In HyPhy: Macroevolutionary phylogentic analysis of species trees and gene trees

These functions are used by other functions in the HyPhy package and not by users

1	get.recon.1(phy, phy.sub, reconcile)

`phy`	The species tree to be reconciled of class “phylo”
`phy.sub`	The gene tree(s) to be reconciled in class “phylo” or “multiPhylo”
`reconcile`	A description of the relationship between the gene tree and the species tree: either `NULL`; a vector of positive integers of length `length(phy.sub$tip.label)`; or a vector of integers and NA of length `max(phy.sub$edge)`. (See details)