IBDLabels: Convert Between Different IBD-State Labelling Schemes

Share:

Convert "label", "lexicographic", "jacquard" and "vec", full state description vector. All conversions are done to and from "label", as used in IBD_Haplo. More information regarding IBD_Haplo can be found at http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml.

Author
Fiona Grimson
Date of publication
2015-02-17 01:07:25
Maintainer
Fiona Grimson <fgrimson@uw.edu>
License
GPL-3
Version
1.1

View on CRAN

Man pages

allJaq
Jacquard ordering
allLex
Lexicographic ordering
allStates
Conversion Table for all labelling schemes
allVec
IBD state vectors
anRpackage-package
Convert between different IBD-state labelling schemes
maxlabel
Maximum Label for given number gametes

Files in this package

IBDLabels
IBDLabels/inst
IBDLabels/inst/doc
IBDLabels/inst/doc/IBDLabels_tutorial.Rnw
IBDLabels/inst/doc/IBDLabels_tutorial.pdf
IBDLabels/inst/doc/IBDLabels_tutorial.R
IBDLabels/NAMESPACE
IBDLabels/R
IBDLabels/R/allJaq.R
IBDLabels/R/vec2label.R
IBDLabels/R/allStates.R
IBDLabels/R/allVec.R
IBDLabels/R/allLex.R
IBDLabels/R/label2jaq.R
IBDLabels/R/maxlabel.R
IBDLabels/R/label2lex.R
IBDLabels/R/lex2label.R
IBDLabels/R/fgl2vec.R
IBDLabels/R/jaq2label.R
IBDLabels/R/label2vec.R
IBDLabels/vignettes
IBDLabels/vignettes/IBDLabels_tutorial.Rnw
IBDLabels/vignettes/states
IBDLabels/vignettes/states/s9.png
IBDLabels/vignettes/states/s2.png
IBDLabels/vignettes/states/s13.png
IBDLabels/vignettes/states/s12.png
IBDLabels/vignettes/states/s14.png
IBDLabels/vignettes/states/s1.png
IBDLabels/vignettes/states/s7.png
IBDLabels/vignettes/states/s10.png
IBDLabels/vignettes/states/s6.png
IBDLabels/vignettes/states/s11.png
IBDLabels/vignettes/states/s8.png
IBDLabels/vignettes/states/s15.png
IBDLabels/vignettes/states/s4.png
IBDLabels/vignettes/states/s3.png
IBDLabels/vignettes/states/ibdstates.svg
IBDLabels/vignettes/states/s5.png
IBDLabels/MD5
IBDLabels/build
IBDLabels/build/vignette.rds
IBDLabels/DESCRIPTION
IBDLabels/man
IBDLabels/man/allLex.Rd
IBDLabels/man/maxlabel.Rd
IBDLabels/man/allStates.Rd
IBDLabels/man/allVec.Rd
IBDLabels/man/allJaq.Rd
IBDLabels/man/anRpackage-package.Rd