allStates: Conversion Table for all labelling schemes

In IBDLabels: Convert Between Different IBD-State Labelling Schemes

Description

Conversion table for all numbering schemes: label, vector, lexicographic, and if there are 4 gametes jacquard15 and jacquard9.

Usage

allStates(ngam)

Arguments

ngam	Number of gametes

Value

A data.frame is returned with the following variables:

$label : vector of all labels from 0 to maxlabel $vec : matrix of all state vectors (one per row) corresponding to labels. $lex : vector of lexicographic states for each label

if there are 4 gametes there is also

$jaq9 : vector of un-phased jacquard states $jaq15 : vector of phased jacquard states

Invalid labels produce NA in the other columns.

Author(s)

Fiona Grimson

Examples

## create lookup matrix

allStates( ngam = 4 )

allStates( ngam = 5 )

IBDLabels documentation built on May 2, 2019, 9:58 a.m.