IBDhaploRtools: Functions for the Analysis of IBD Haplo Output

Functions to analyze, plot, and store the output of running IBD_Haplo software package. More information regarding IBD_Haplo can be found at http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml.

AuthorMarshall Brown, Fiona Grimson
Date of publication2015-02-17 01:07:43
MaintainerFiona Grimson <fgrimson@uw.edu>
LicenseGPL-3
Version1.8

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Files

IBDhaploRtools
IBDhaploRtools/inst
IBDhaploRtools/inst/doc
IBDhaploRtools/inst/doc/IBDhaploRtools_tutorial.pdf
IBDhaploRtools/inst/doc/IBDhaploRtools_tutorial.R
IBDhaploRtools/inst/doc/IBDhaploRtools_tutorial.Rnw
IBDhaploRtools/NAMESPACE
IBDhaploRtools/data
IBDhaploRtools/data/trueibd_phased.RData
IBDhaploRtools/data/qibd_unphased.RData
IBDhaploRtools/data/posvec.RData
IBDhaploRtools/data/qibd_phased.RData
IBDhaploRtools/data/ids_phased.RData
IBDhaploRtools/data/ids_unphased.RData
IBDhaploRtools/R
IBDhaploRtools/R/make.col.vec.R IBDhaploRtools/R/ibdhap.compare.loci.R IBDhaploRtools/R/return.ibd.val.R IBDhaploRtools/R/ibdhap.seg.lengths.R IBDhaploRtools/R/ibdhap.barplot.R IBDhaploRtools/R/ibdhap.reduce.states.R IBDhaploRtools/R/ibdhap.names.R IBDhaploRtools/R/cumul.sum.R IBDhaploRtools/R/ibdhap.transitions.R IBDhaploRtools/R/ibdhap.compare.segs.R IBDhaploRtools/R/ibdhap.make.true.R IBDhaploRtools/R/sumcol.R IBDhaploRtools/R/meet.cutoff.R IBDhaploRtools/R/removezeros.R IBDhaploRtools/R/ibdhap.summary.calls.R IBDhaploRtools/R/h.to.g.R IBDhaploRtools/R/get.counts.R IBDhaploRtools/R/ibdhap.make.calls.R
IBDhaploRtools/vignettes
IBDhaploRtools/vignettes/IBDhaploRtools_tutorial.Rnw
IBDhaploRtools/MD5
IBDhaploRtools/build
IBDhaploRtools/build/vignette.rds
IBDhaploRtools/DESCRIPTION
IBDhaploRtools/man
IBDhaploRtools/man/IBDhaploRtools-package.Rd IBDhaploRtools/man/h.to.g.Rd IBDhaploRtools/man/ibdhap.barplot.Rd IBDhaploRtools/man/ids_phased.Rd IBDhaploRtools/man/return.ibd.val.Rd IBDhaploRtools/man/ibdhap.make.calls.Rd IBDhaploRtools/man/cumul.sum.Rd IBDhaploRtools/man/meet.cutoff.Rd IBDhaploRtools/man/ibdhap.names.Rd IBDhaploRtools/man/ibdhap.compare.segs.Rd IBDhaploRtools/man/ibdhap.compare.loci.Rd IBDhaploRtools/man/ibdhap.summary.Rd IBDhaploRtools/man/ibdhap.make.true.Rd IBDhaploRtools/man/make.col.vec.Rd IBDhaploRtools/man/ibdhap.seg.lengths.Rd IBDhaploRtools/man/get.counts.Rd IBDhaploRtools/man/removezeros.Rd IBDhaploRtools/man/ibdhap.transitions.Rd IBDhaploRtools/man/ibdhap.reduce.states.Rd IBDhaploRtools/man/sumcol.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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