Man pages for IBDhaploRtools
Functions for the Analysis of IBD Haplo Output
| cumul.sum | cumulative.sums |
| get.counts | get counts |
| h.to.g | Convert haplotype states to genotype states |
| ibdhap.barplot | create ibd barplot |
| ibdhap.compare.loci | ibdhap compare.loci |
| ibdhap.compare.segs | ibdhap compare segments |
| IBDhaploRtools-package | Functions for the Analysis of IBD Haplo output |
| ibdhap.make.calls | ibdhap.make.calls |
| ibdhap.make.true | ibdhap make true states |
| ibdhap.names | Get chromosome names |
| ibdhap.reduce.states | ibdhap reduce states |
| ibdhap.seg.lengths | ibdhap.seg.lengths |
| ibdhap.summary | ibdhap summary of called states |
| ibdhap.transitions | create transition matrix |
| ids_phased | Example MORGAN IBDhaplo output |
| make.col.vec | make color vector |
| meet.cutoff | meet cutoff |
| removezeros | remove zeros |
| return.ibd.val | return ibd value |
| sumcol | sum over specific columns |
