FCS_to_data: FCS Object Converter

In IFC: Tools for Imaging Flow Cytometry

FCS Object Converter

Description

Converts FCS data object to 'IFC_data' object.

Usage

FCS_to_data(fcs, ...)

Arguments

fcs	'IFC_fcs' object as extracted by readFCS().
...	other arguments to be passed.

Details

in data can contain extra columns named 'import_file' and 'import_subfile' intended to allow file/dataset identification

Value

A named list of class 'IFC_data', whose members are:
-description, a list of descriptive information,
-Merged_fcs, character vector of path of files used to create fcs, if input was a merged,
-Keywords, a named-list of keywords values, only keywords from 1st 'fcs' segment will be retrieved
-fileName, path of fileName input,
-fileName_image, path of .cif image fileName is referring to,
-features, a data.frame of features,
-features_def, a describing how features are defined,
-graphs, a list of graphical elements found,
-pops, a list describing populations found,
-regions, a list describing how regions are defined,
-images, a data.frame describing information about images,
-offsets, an integer vector of images and masks IFDs offsets,
-stats, a data.frame describing populations count and percentage to parent and total population,
-checksum, a checksum integer.

IFC documentation built on Sept. 14, 2023, 1:08 a.m.