popsNetwork: IFC_pops Network Display

In IFC: Tools for Imaging Flow Cytometry

IFC_pops Network Display

Description

Builds and displays populations network.

Usage

popsNetwork(
  obj,
  hierarchical = TRUE,
  color_mode = "white",
  highlight = NULL,
  seed = NULL,
  direction = "LR",
  weighted = TRUE,
  ...
)

Arguments

obj	an 'IFC_data' object extracted with features extracted.
hierarchical	whether to display network using a hierarchical layout or not. Default is TRUE.
color_mode	Whether to extract colors from 'obj' in "white" or "black" mode. Default is "white".
highlight	population to permanently highlight. If found in 'obj', this population will be displayed with its color. Default is NULL.
seed	If you provide a seed manually, the layout will be the same every time. Default is NULL.
direction	The direction of the hierarchical layout. Default is 'LR'. The available options are: 'UD', 'DU', 'LR', 'RL'. To simplify: up-down, down-up, left-right, right-left.
weighted	whether to scale population's node size according to count. Default is TRUE.
...	other argument to be passed.

Value

a visNetwork object.

Examples

if(requireNamespace("IFCdata", quietly = TRUE)) {
  ## use a daf file
  file_daf <- system.file("extdata", "example.daf", package = "IFCdata")
  daf <- ExtractFromDAF(fileName = file_daf)
  popsNetwork(obj = daf)
} else {
  message(sprintf('Please run `install.packages("IFCdata", repos = "%s", type = "source")` %s',
                  'https://gitdemont.github.io/IFCdata/',
                  'to install extra files required to run this example.'))
}

IFC documentation built on Sept. 14, 2023, 1:08 a.m.