swap_channel: Channel Swap

In IFC: Tools for Imaging Flow Cytometry

Channel Swap

Description

Swaps Channels within 'IFC_data' object

Usage

swap_channel(obj, chan1, chan2, BF = TRUE, MODE = 1)

Arguments

obj	an 'IFC_data' object extracted with features extracted.
chan1, chan2	an integer index of channel. 'chan1' and 'chan2' should be different.
BF	should 'from' channel be considered as brightfield. Default is TRUE.
MODE	collection mode (as retrieved by getInfo) determining the range. Default is 1.

Details

'BF' and 'MODE' will be used only if 'chan1' or 'chan2' is not found in 'obj'.
/!\ NOTE: In case of conflict between resulting names, 'chan2' will be preferred, maximizing number of features with 'chan2'.

Value

a list, intended to be passed to 'new_feat_def' argument of getFromNamespace("redefine_obj", "IFC") whose members are:
-features_def, an 'IFC_features_def' object, or a list containing features definition
-masks, an 'IFC_masks' object or a data.frame containing masks definition and name.
-images, a data.frame containing images definition.

IFC documentation built on Sept. 14, 2023, 1:08 a.m.