addPdfGrowthPic | Adds probability density functions of density function of... |
coerceGrowthObj | Function to coerce growth or survival objects, i.e., impose... |
convergeIPM | Iterates until obtaining the number of bins required so that... |
convertIncrement | Convert size increment according to time elapsed between... |
dataIPMpackCryptantha.csv | Cryptantha Perennial Dataset with Covariates |
dataIPMpackHypericumCov.csv | Hypericum Perennial Dataset with covariates |
dataIPMpackHypericum.csv | Hypericum Perennial Dataset |
dataIPMpackSilwood.csv | Silwood Monocarp Dataset |
dataIPMpackSuccisa2.csv | Succisa pratensis Dataset |
dataIPMpackSuccisa.csv | Succisa pratensis Dataset |
diagnosticsPmatrix | Creates a series of diagnostic graphs for a P matrix. |
discreteTrans-class | Class '"discreteTrans"' |
discreteTransInteger-class | Class '"discreteTransInteger"' |
elas | Estimates matrix element sensitivities and elasticities. |
envMatrix-class | Class "envMatrix" |
fecObj-class | Class "fecObj" |
fecObjInteger-class | Class "fecObjInteger" |
generateData | Generates random data in the form used by IPMpack. |
growSurv | Combines growth and survival. |
growth | Estimates growth probabilities. |
growthCum | Models growth allowing for cumulative bin estimation. |
growthCum-methods | ~~ Methods for Function 'growthCum' ~~ |
growth-methods | ~~ Methods for Function 'growth' ~~ |
growthModelComp | Compares growth and survival objects built from different... |
growthObj-class | Class "growthObj" |
growthObjDeclineVar-class | Class "growthObjDeclineVar" |
growthObjHossfeld-class | Class "growthObjHossfeld" |
growthObjIncr-class | Class "growthObjIncr" |
growthObjIncrDeclineVar-class | Class "growthObjIncrDeclineVar" |
growthObjLogIncr-class | Class '"growthObjLogIncr"' |
growthObjLogIncrDeclineVar-class | Class '"growthObjLogIncrDeclineVar"' |
growthObjNegBin-class | Class "growthObjNegBin" |
growthObjPois | Class "growthObjPois" |
growthObjTruncIncr-class | Class '"growthObjTruncIncr"' |
Hossfeld | Creates a Hossfeld function defining growth. |
IPMmatrix-class | Class '"IPMmatrix"' |
IPMpack-internal | Internal IPMpack objects. |
IPMpackNews | Show a text file containing package news and updates. |
IPMpack-package | Construction and analysis of integral projection models and... |
largeMatrixCalc | Calculates population growth rate (lambda) and stable stage... |
logit | Implements a logistic transform. |
makeClonalObj | Function to build clonal reproduction objects |
makeCompoundCmatrix | Builds a compound C matrix. |
makeCompoundFmatrix | Builds a compound F matrix. |
makeCompoundPmatrix | Builds a compound P matrix. |
makeDiscreteTrans | Builds matrix for transitions between discrete (e.g.... |
makeDiscreteTransInteger | Builds matrix for transitions between discrete (e.g.... |
makeEnvObj | Builds environmental transition objects. |
makeFecObj | Function to build fecundity objects |
makeFecObjInteger | Function to build fecundity objects |
makeGrowthObj | Function to build growth objects |
makeGrowthObjHossfeld | Function to make a Hossfeld Growth Object |
makeIntegerFmatrix | Builds P and F matrices built off regressions fitted to... |
makeIPMCmatrix | Builds C matrices. |
makeIPMFmatrix | Builds F matrices. |
makeIPMmatrix | Builds IPM matrices. |
makeIPMPmatrix | Builds P matrices. |
makeOffspringObj | Function to build offspring objects |
makeSurvObj | Functions to build survival objects |
meanLifeExpect | Calculates the mean life expectancy. |
passageTime | Defines passage time to a chosen continuous stage. |
picGrow | Makes pictures of data with growth models |
picSurv | Makes pictures of survival. |
plotGrowthModelComp | Plots compared models built with 'growthModelComp' and... |
predictFutureDistribution | Predicts continuous (e.g. size) stage distribution in the... |
R0Calc | Calculates net reproductive rate (R0) from an IPM. |
sampleIPM | Builds list of IPMs or P matrices from list growth, survival,... |
sampleIPMOutput | Gets IPM output from a list of P matrices (only survival and... |
sampleSequentialIPMs | Makes a list of IPMs where there is a discrete covariate. |
sampleVitalRateObj | Calculates growth objects reflecting distribution of... |
sensParams | Estimates sensitivity and elasticity of lambda (or R0, or... |
simulateCarlina | Generates random data in the form used by IPMpack based on... |
sizeToAge | Estimates size/stage to age relationships |
stochGrowthRateManyCov | Estimates stochastic population growth rates (lambda_s) or... |
stochGrowthRateSampleList | Estimating the stochastic population growth rate (lambda_s)... |
stochPassageTime | Estimates passage time in a discretely varying environment. |
surv | Survival |
survivorship | Estimates survivorship between two time censuses. |
surv-methods | ~~ Methods for Function surv ~~ |
survObj-class | Class "survObj" |
survObjOverDisp-class | Class '"survObjOverDisp"' |
timeToSize | Projects how long it takes to get from a starting... |
varLifeExpect | Calculates variation in life expectancy in a discretely... |
varPassageTime | Estimates variation in passage time. |
wrapHossfeld | Fitting Hossfeld growth function. |
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