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 IPMpack: Builds and analyses Integral Projection Models (IPMs).
 fecObjIntegerclass: Class "fecObjInteger"
Class "fecObjInteger"
Description
A class object description
Objects from the Class
Objects can be created by calls of the form new("fecObjInteger", ...)
.
Slots
"fecConstants" "offspringSplitter" "meanOffspringSize" "sdOffspringSize" "fecByDiscrete" "Transform"
fitFec
:Object of class
"list"
~~fecConstants
:Object of class
"data.frame"
~~fecNames
:Object of class
"character"
~~offspringSplitter
:Object of class
"data.frame"
~~offspringRel
:Object of class
"glm"
~~vitalRatesPerOffspringType
:Object of class
"data.frame"
~~thetaOffspringSize
:Object of class
"numeric"
~~fecByDiscrete
:Object of class
"data.frame"
~~Transform
:Object of class
"character"
~~distOffspring
:Object of class
"character"
~~
Methods
No methods defined with class "fecObj" in the signature.
Author(s)
C. Jessica E. Metcalf, Sean M. McMahon, Roberto SalgueroGomez, Eelke Jongejans & Cory Merow.
Examples
1  showClass("fecObjInteger")

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 addPdfGrowthPic: Adds probability density functions of density function of...
 coerceGrowthObj: Function to coerce growth or survival objects, i.e., impose...
 convergeIPM: Iterates until obtaining the number of bins required so that...
 convertIncrement: Convert size increment according to time elapsed between...
 dataIPMpackCryptantha.csv: Cryptantha Perennial Dataset with Covariates
 dataIPMpackHypericumCov.csv: Hypericum Perennial Dataset with covariates
 dataIPMpackHypericum.csv: Hypericum Perennial Dataset
 dataIPMpackSilwood.csv: Silwood Monocarp Dataset
 dataIPMpackSuccisa2.csv: Succisa pratensis Dataset
 dataIPMpackSuccisa.csv: Succisa pratensis Dataset
 diagnosticsPmatrix: Creates a series of diagnostic graphs for a P matrix.
 discreteTransclass: Class '"discreteTrans"'
 discreteTransIntegerclass: Class '"discreteTransInteger"'
 elas: Estimates matrix element sensitivities and elasticities.
 envMatrixclass: Class "envMatrix"
 fecObjclass: Class "fecObj"
 fecObjIntegerclass: Class "fecObjInteger"
 generateData: Generates random data in the form used by IPMpack.
 growSurv: Combines growth and survival.
 growth: Estimates growth probabilities.
 growthCum: Models growth allowing for cumulative bin estimation.
 growthCummethods: ~~ Methods for Function 'growthCum' ~~
 growthmethods: ~~ Methods for Function 'growth' ~~
 growthModelComp: Compares growth and survival objects built from different...
 growthObjclass: Class "growthObj"
 growthObjDeclineVarclass: Class "growthObjDeclineVar"
 growthObjHossfeldclass: Class "growthObjHossfeld"
 growthObjIncrclass: Class "growthObjIncr"
 growthObjIncrDeclineVarclass: Class "growthObjIncrDeclineVar"
 growthObjLogIncrclass: Class '"growthObjLogIncr"'
 growthObjLogIncrDeclineVarclass: Class '"growthObjLogIncrDeclineVar"'
 growthObjNegBinclass: Class "growthObjNegBin"
 growthObjPois: Class "growthObjPois"
 growthObjTruncIncrclass: Class '"growthObjTruncIncr"'
 Hossfeld: Creates a Hossfeld function defining growth.
 IPMmatrixclass: Class '"IPMmatrix"'
 IPMpackinternal: Internal IPMpack objects.
 IPMpackNews: Show a text file containing package news and updates.
 IPMpackpackage: Construction and analysis of integral projection models and...
 largeMatrixCalc: Calculates population growth rate (lambda) and stable stage...
 logit: Implements a logistic transform.
 makeClonalObj: Function to build clonal reproduction objects
 makeCompoundCmatrix: Builds a compound C matrix.
 makeCompoundFmatrix: Builds a compound F matrix.
 makeCompoundPmatrix: Builds a compound P matrix.
 makeDiscreteTrans: Builds matrix for transitions between discrete (e.g....
 makeDiscreteTransInteger: Builds matrix for transitions between discrete (e.g....
 makeEnvObj: Builds environmental transition objects.
 makeFecObj: Function to build fecundity objects
 makeFecObjInteger: Function to build fecundity objects
 makeGrowthObj: Function to build growth objects
 makeGrowthObjHossfeld: Function to make a Hossfeld Growth Object
 makeIntegerFmatrix: Builds P and F matrices built off regressions fitted to...
 makeIPMCmatrix: Builds C matrices.
 makeIPMFmatrix: Builds F matrices.
 makeIPMmatrix: Builds IPM matrices.
 makeIPMPmatrix: Builds P matrices.
 makeOffspringObj: Function to build offspring objects
 makeSurvObj: Functions to build survival objects
 meanLifeExpect: Calculates the mean life expectancy.
 passageTime: Defines passage time to a chosen continuous stage.
 picGrow: Makes pictures of data with growth models
 picSurv: Makes pictures of survival.
 plotGrowthModelComp: Plots compared models built with 'growthModelComp' and...
 predictFutureDistribution: Predicts continuous (e.g. size) stage distribution in the...
 R0Calc: Calculates net reproductive rate (R0) from an IPM.
 sampleIPM: Builds list of IPMs or P matrices from list growth, survival,...
 sampleIPMOutput: Gets IPM output from a list of P matrices (only survival and...
 sampleSequentialIPMs: Makes a list of IPMs where there is a discrete covariate.
 sampleVitalRateObj: Calculates growth objects reflecting distribution of...
 sensParams: Estimates sensitivity and elasticity of lambda (or R0, or...
 simulateCarlina: Generates random data in the form used by IPMpack based on...
 sizeToAge: Estimates size/stage to age relationships
 stochGrowthRateManyCov: Estimates stochastic population growth rates (lambda_s) or...
 stochGrowthRateSampleList: Estimating the stochastic population growth rate (lambda_s)...
 stochPassageTime: Estimates passage time in a discretely varying environment.
 surv: Survival
 survivorship: Estimates survivorship between two time censuses.
 survmethods: ~~ Methods for Function surv ~~
 survObjclass: Class "survObj"
 survObjOverDispclass: Class '"survObjOverDisp"'
 timeToSize: Projects how long it takes to get from a starting...
 varLifeExpect: Calculates variation in life expectancy in a discretely...
 varPassageTime: Estimates variation in passage time.
 wrapHossfeld: Fitting Hossfeld growth function.