InSilicoVA: Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm

Computes individual causes of death and population cause-specific mortality fractions using the 'InSilicoVA' algorithm from McCormick et al (2016) <DOI:10.1080/01621459.2016.1152191>. It uses data derived from verbal autopsy (VA) interviews, in a format similar to the input of the widely used 'InterVA4' method. This package provides general model fitting and customization for 'InSilicoVA' algorithm and basic graphical visualization of the output.

AuthorZehang Li, Tyler McCormick, Sam Clark
Date of publication2017-01-25 09:02:40
MaintainerZehang Li <lizehang@uw.edu>
LicenseGPL-2
Version1.1.4

View on CRAN

Functions

causetext Man page
condprob Man page
condprobnum Man page
csmf.diag Man page
extract.prob Man page
get.indiv Man page
indivplot Man page
insilico Man page
insilico.fit Man page
insilico.train Man page
InsilicoVA Man page
InsilicoVA-package Man page
physician_debias Man page
plot.insilico Man page
print.insilico Man page
print.insilico_summary Man page
probbase Man page
probbase3 Man page
RandomPhysician Man page
RandomVA1 Man page
SampleCategory Man page
SamplePhysician Man page
stackplot Man page
summary.insilico Man page
updateIndiv Man page

Files

InSilicoVA
InSilicoVA/inst
InSilicoVA/inst/NEWS.Rd
InSilicoVA/inst/java
InSilicoVA/inst/java/Insilico.jar
InSilicoVA/NAMESPACE
InSilicoVA/data
InSilicoVA/data/RandomVA1.rda
InSilicoVA/data/probbase.rda
InSilicoVA/data/probbase3.rda
InSilicoVA/data/condprobnum.rda
InSilicoVA/data/RandomVA2.rda
InSilicoVA/data/SamplePhysician.rda
InSilicoVA/data/condprob.rda
InSilicoVA/data/SampleCategory.rda
InSilicoVA/data/causetext.rda
InSilicoVA/data/RandomPhysician.rda
InSilicoVA/R
InSilicoVA/R/report.r
InSilicoVA/R/indivplot.r
InSilicoVA/R/diag.r
InSilicoVA/R/plot.r
InSilicoVA/R/print_insilico.r
InSilicoVA/R/onLoad.r
InSilicoVA/R/insilico_train.r
InSilicoVA/R/extct_prob.r
InSilicoVA/R/phy_debias.r
InSilicoVA/R/get_indiv.r
InSilicoVA/R/insilico_core.r
InSilicoVA/R/groupplot.r
InSilicoVA/R/print_insilico_summary.r
InSilicoVA/R/insilico_standard.r
InSilicoVA/R/zzz.R
InSilicoVA/MD5
InSilicoVA/java
InSilicoVA/java/Insilico
InSilicoVA/java/Insilico/src
InSilicoVA/java/Insilico/src/MathUtil.java
InSilicoVA/java/Insilico/src/ProgressPopup.java
InSilicoVA/java/Insilico/src/InsilicoSampler.java
InSilicoVA/java/Insilico/src/ProgressBar.java
InSilicoVA/DESCRIPTION
InSilicoVA/man
InSilicoVA/man/updateIndiv.Rd InSilicoVA/man/SamplePhysician.Rd InSilicoVA/man/RandomVA1.Rd InSilicoVA/man/InsilicoVA-package.Rd InSilicoVA/man/causetext.Rd InSilicoVA/man/extract.prob.Rd InSilicoVA/man/summary.insilico.Rd InSilicoVA/man/RandomPhysician.Rd InSilicoVA/man/condprob.Rd InSilicoVA/man/probbase3.Rd InSilicoVA/man/SampleCategory.Rd InSilicoVA/man/insilico.Rd InSilicoVA/man/get.indiv.Rd InSilicoVA/man/physician_debias.Rd InSilicoVA/man/insilico.fit.Rd InSilicoVA/man/plot.insilico.Rd
InSilicoVA/man/RandomVA2.rd
InSilicoVA/man/stackplot.Rd InSilicoVA/man/indivplot.Rd InSilicoVA/man/csmf.diag.Rd InSilicoVA/man/condprobnum.Rd InSilicoVA/man/probbase.Rd InSilicoVA/man/insilico.train.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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