InSilicoVA: Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm

Computes individual causes of death and population cause-specific mortality fractions using the 'InSilicoVA' algorithm from McCormick et al (2016) <DOI:10.1080/01621459.2016.1152191>. It uses data derived from verbal autopsy (VA) interviews, in a format similar to the input of the widely used 'InterVA4' method. This package provides general model fitting and customization for 'InSilicoVA' algorithm and basic graphical visualization of the output.

AuthorZehang Li, Tyler McCormick, Sam Clark
Date of publication2017-01-06 23:21:38
MaintainerZehang Li <lizehang@uw.edu>
LicenseGPL-2
Version1.1.3

View on CRAN

Files in this package

InSilicoVA
InSilicoVA/inst
InSilicoVA/inst/NEWS.rd
InSilicoVA/inst/java
InSilicoVA/inst/java/Insilico.jar
InSilicoVA/NAMESPACE
InSilicoVA/data
InSilicoVA/data/RandomVA1.rda
InSilicoVA/data/probbase.rda
InSilicoVA/data/probbase3.rda
InSilicoVA/data/condprobnum.rda
InSilicoVA/data/RandomVA2.rda
InSilicoVA/data/SamplePhysician.rda
InSilicoVA/data/condprob.rda
InSilicoVA/data/SampleCategory.rda
InSilicoVA/data/causetext.rda
InSilicoVA/data/RandomPhysician.rda
InSilicoVA/R
InSilicoVA/R/report.r
InSilicoVA/R/indivplot.r
InSilicoVA/R/diag.r
InSilicoVA/R/plot.r
InSilicoVA/R/print_insilico.r
InSilicoVA/R/onLoad.r
InSilicoVA/R/insilico_train.r
InSilicoVA/R/extct_prob.r
InSilicoVA/R/phy_debias.r
InSilicoVA/R/get_indiv.r
InSilicoVA/R/insilico_core.r
InSilicoVA/R/groupplot.r
InSilicoVA/R/print_insilico_summary.r
InSilicoVA/R/insilico_standard.r
InSilicoVA/R/zzz.R
InSilicoVA/MD5
InSilicoVA/java
InSilicoVA/java/Insilico
InSilicoVA/java/Insilico/src
InSilicoVA/java/Insilico/src/MathUtil.java
InSilicoVA/java/Insilico/src/ProgressPopup.java
InSilicoVA/java/Insilico/src/InsilicoSampler.java
InSilicoVA/java/Insilico/src/ProgressBar.java
InSilicoVA/DESCRIPTION
InSilicoVA/man
InSilicoVA/man/updateIndiv.Rd InSilicoVA/man/SamplePhysician.Rd InSilicoVA/man/RandomVA1.Rd InSilicoVA/man/InsilicoVA-package.Rd InSilicoVA/man/causetext.Rd InSilicoVA/man/extract.prob.Rd InSilicoVA/man/summary.insilico.Rd InSilicoVA/man/RandomPhysician.Rd InSilicoVA/man/condprob.Rd InSilicoVA/man/probbase3.Rd InSilicoVA/man/SampleCategory.Rd InSilicoVA/man/insilico.Rd InSilicoVA/man/get.indiv.Rd InSilicoVA/man/physician_debias.Rd InSilicoVA/man/insilico.fit.Rd InSilicoVA/man/plot.insilico.Rd
InSilicoVA/man/RandomVA2.rd
InSilicoVA/man/stackplot.Rd InSilicoVA/man/indivplot.Rd InSilicoVA/man/csmf.diag.Rd InSilicoVA/man/condprobnum.Rd InSilicoVA/man/probbase.Rd InSilicoVA/man/insilico.train.Rd

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